Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_L01
         (810 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi...   134   5e-32
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi...   131   6e-31
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi...   131   6e-31
At3g60400.1 68416.m06755 mitochondrial transcription termination...    29   3.7  
At5g22400.1 68418.m02613 rac GTPase activating protein, putative...    28   8.4  
At5g11390.1 68418.m01329 expressed protein                             28   8.4  

>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
           to ribosomal protein GI:806279 from [Arabidopsis
           thaliana]
          Length = 390

 Score =  134 bits (325), Expect = 5e-32
 Identities = 70/136 (51%), Positives = 91/136 (66%), Gaps = 1/136 (0%)
 Frame = -3

Query: 682 IPVDSVLPKMK*LTALVSPRAKDTK-VSLXVGTQRSYPVRHXKGLRKVACIGAWHPSRVS 506
           +PVD++  K + +  +   + K  + V    G  R  P +  +GLRKVACIGAWHP+RVS
Sbjct: 206 VPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTR-LPRKTHRGLRKVACIGAWHPARVS 264

Query: 505 FXVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHY 326
           + VARAGQ GYHHRTEMNKK+YR+G     K G+   ++A TEYD +EK ITPMGGFPHY
Sbjct: 265 YTVARAGQNGYHHRTEMNKKVYRVG-----KVGQE-THSAMTEYDRTEKDITPMGGFPHY 318

Query: 325 GEVNNDFVMXQGLLHG 278
           G V  D++M +G   G
Sbjct: 319 GIVKEDYLMIKGCCVG 334



 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 37/61 (60%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
 Frame = -1

Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMG-TL 118
           KGCC+GPKKR++TLR++L   T R A+E+I LKFID +S  GHGRFQT  +KA F G T+
Sbjct: 329 KGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGRTI 388

Query: 117 K 115
           K
Sbjct: 389 K 389


>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  131 bits (316), Expect = 6e-31
 Identities = 69/136 (50%), Positives = 90/136 (66%), Gaps = 1/136 (0%)
 Frame = -3

Query: 682 IPVDSVLPKMK*LTALVSPRAKDTK-VSLXVGTQRSYPVRHXKGLRKVACIGAWHPSRVS 506
           IP+++V  K + +  +   + K  + V    G  R  P +  +GLRKVACIGAWHP+RVS
Sbjct: 206 IPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR-LPRKTHRGLRKVACIGAWHPARVS 264

Query: 505 FXVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHY 326
           + VARAGQ GYHHRTE+NKKIYR+G     K G    + A TEYD +EK +TPMGGFPHY
Sbjct: 265 YTVARAGQNGYHHRTELNKKIYRLG-----KVG-TEAHTAMTEYDRTEKDVTPMGGFPHY 318

Query: 325 GEVNNDFVMXQGLLHG 278
           G V +D++M +G   G
Sbjct: 319 GIVKDDYLMIKGCCVG 334



 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 38/61 (62%), Positives = 46/61 (75%)
 Frame = -1

Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 115
           KGCC+GPKKR++TLR+SL   T R ALE+I LKFIDT+S FGHGRFQT  +K  F   + 
Sbjct: 329 KGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVT 388

Query: 114 K 112
           K
Sbjct: 389 K 389


>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  131 bits (316), Expect = 6e-31
 Identities = 69/136 (50%), Positives = 90/136 (66%), Gaps = 1/136 (0%)
 Frame = -3

Query: 682 IPVDSVLPKMK*LTALVSPRAKDTK-VSLXVGTQRSYPVRHXKGLRKVACIGAWHPSRVS 506
           IP+++V  K + +  +   + K  + V    G  R  P +  +GLRKVACIGAWHP+RVS
Sbjct: 206 IPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR-LPRKTHRGLRKVACIGAWHPARVS 264

Query: 505 FXVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHY 326
           + VARAGQ GYHHRTE+NKKIYR+G     K G    + A TEYD +EK +TPMGGFPHY
Sbjct: 265 YTVARAGQNGYHHRTELNKKIYRLG-----KVG-TEAHTAMTEYDRTEKDVTPMGGFPHY 318

Query: 325 GEVNNDFVMXQGLLHG 278
           G V +D++M +G   G
Sbjct: 319 GIVKDDYLMIKGCCVG 334



 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 38/61 (62%), Positives = 46/61 (75%)
 Frame = -1

Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 115
           KGCC+GPKKR++TLR+SL   T R ALE+I LKFIDT+S FGHGRFQT  +K  F   + 
Sbjct: 329 KGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVT 388

Query: 114 K 112
           K
Sbjct: 389 K 389


>At3g60400.1 68416.m06755 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 558

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -3

Query: 475 YHHRTEMNKKIYRIGQGIHKKDGK--VIKNNASTEYDLSEKSITPMGGFPHYG 323
           Y     MNK  Y    G+ K+D    +++N A   +DL +  I+  G   H+G
Sbjct: 262 YSEEALMNKAGYFCRFGVSKEDAALLILRNPAIMNFDLEKPVISVTGMLKHFG 314


>At5g22400.1 68418.m02613 rac GTPase activating protein, putative
           similar to rac GTPase activating protein 1 [Lotus
           japonicus] GI:3695059; contains Pfam profile PF00620:
           RhoGAP domain
          Length = 466

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -2

Query: 206 STSNSLTPRPSSVMVDSRRRLTRLHSWVHSRR 111
           S+S+S +P PSS+   SR   T L S  H+RR
Sbjct: 17  SSSSSSSPSPSSLSYASRSNATLLISSDHNRR 48


>At5g11390.1 68418.m01329 expressed protein
          Length = 703

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 633 CHQGQRIQRCHXSLAHKEATP*DTXRVLGKLPALELGIL 517
           CHQG R+Q    SL + E     +   +G +  L++G L
Sbjct: 639 CHQGSRLQATFISLTNPEEEETGSKSDIGSVRRLDVGAL 677


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,705,097
Number of Sequences: 28952
Number of extensions: 344652
Number of successful extensions: 802
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)