Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_K22
         (816 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54151| Best HMM Match : PAN (HMM E-Value=0.00084)                   29   3.4  
SB_54839| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_264| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.5  
SB_45040| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.0  

>SB_54151| Best HMM Match : PAN (HMM E-Value=0.00084)
          Length = 326

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 637 RELPPRHGPGSAPHWTDPSHPTLLTRTYC 723
           R+L P   P +  +W DP     L R YC
Sbjct: 116 RDLAPNADPTTGEYWIDPEADRTLLRVYC 144


>SB_54839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1409

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = +1

Query: 613 GKTXGTLPRELPPRHGPGS-APHWTDPSHPT----LLTRTYCY 726
           G     +P  L P +  G+ AP W + SHPT    ++TR  CY
Sbjct: 576 GAAGSAMPTSLVPINRCGTHAPGWMEGSHPTVAEGIVTRKVCY 618


>SB_264| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
 Frame = +1

Query: 610 SGKTXGTLPRELPPRHGPGS-APHWTDPSHPT----LLTRTYCY 726
           +G+    +P    P    G+ AP W D +HPT    ++TR  CY
Sbjct: 39  TGQAGDAMPTSCVPEKRCGTHAPGWMDGNHPTVADGIVTRKVCY 82


>SB_45040| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 566 GEHGAGRQRVCRGASPERHXEHCHASFH 649
           G+   GR RVC   +P R  EHC    H
Sbjct: 49  GQGVRGRTRVCNNPAPGRLGEHCAGKDH 76


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,720,977
Number of Sequences: 59808
Number of extensions: 233637
Number of successful extensions: 608
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)