Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_K21
         (809 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373...    31   1.4  
07_03_0846 - 21983581-21986055                                         29   3.3  
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315...    29   3.3  
07_03_1086 + 23858419-23859423,23859527-23859610                       29   4.4  
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298...    29   4.4  
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581     29   5.8  
03_05_0183 - 21681673-21682524                                         28   7.6  

>06_03_1055 -
           27234824-27234838,27236087-27236125,27236322-27237388,
           27237422-27237630,27237650-27238053
          Length = 577

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -2

Query: 352 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 218
           A+ A +GK +   E  E   S+QCD T  + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473


>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +3

Query: 210 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 359
           DL+D  G  +R    +C+T    S     PD   S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373


>02_04_0232 +
           21130122-21130454,21130895-21131053,21131424-21131582,
           21132420-21132512,21133321-21133437,21133623-21133697,
           21133878-21134104,21134200-21135073
          Length = 678

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +3

Query: 84  PSTTPRQERKSSTDYSESRHRTELYPDLRSRDARVKKKTDSID 212
           PS TP  ER  S+D    R     Y   R+RD    K+  S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407


>07_03_1086 + 23858419-23859423,23859527-23859610
          Length = 362

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
 Frame = -2

Query: 499 LLMACRCDSNTAQYERNRSFGHLVHALDRAAGGAKLPSAGLCLNA-----SKAEASLAES 335
           LL    CD N A      +   LVHAL  AA  A   +A   L         A AS+  +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188

Query: 334 GKDMLTVEPRESGGSK 287
           G   L V   E+GG++
Sbjct: 189 GAIPLLVSLLETGGAR 204


>01_01_0386 -
           2985563-2985986,2986301-2986390,2986529-2986668,
           2986798-2986893,2987003-2987042,2987760-2987887
          Length = 305

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 87  STTPRQERKSSTDYSESRHRTELYPDLRSRDARVKKKTDS-IDLRDPNGLRR 239
           S +PR+ R     YS SR R+        RD+R ++++ S  D R P G  R
Sbjct: 143 SPSPRRGRSRGRSYSRSRSRSYSRSQSPRRDSRNERRSRSPRDSRSPRGSPR 194


>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
          Length = 311

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 439 GHLVHALDR-AAGGAKLPSAGLCLNASKAEASLA 341
           G LV  L R   GG    SAG+C   S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236


>03_05_0183 - 21681673-21682524
          Length = 283

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 652 SQAFIATLLFDPSMSALPIIAKQK 581
           SQAF A LL D + +A+P++  QK
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQK 252


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,085,600
Number of Sequences: 37544
Number of extensions: 503244
Number of successful extensions: 1426
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1426
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)