Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_K21
(809 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g18830.2 68418.m02238 squamosa promoter-binding protein-like ... 31 1.2
At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) conta... 30 2.1
At4g35390.1 68417.m05027 DNA-binding protein-related contains Pf... 29 2.8
At3g47720.1 68416.m05199 expressed protein 29 2.8
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela... 29 3.7
At3g01810.1 68416.m00123 expressed protein 29 4.8
At2g32590.1 68415.m03979 barren family protein low similarity to... 28 6.4
At2g06140.1 68415.m00675 hypothetical protein 28 6.4
At5g03560.1 68418.m00314 expressed protein 28 8.4
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 28 8.4
At1g63240.1 68414.m07148 expressed protein 28 8.4
>At5g18830.2 68418.m02238 squamosa promoter-binding protein-like 7
(SPL7) identical to squamosa promoter binding
protein-like 7 [Arabidopsis thaliana] GI:5931635;
contains Pfam profile PF03110: SBP domain
Length = 775
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -2
Query: 526 TVVRQVSFTLLMACRCDSNTAQYERNRSFGHLVHALDRAAGGAKLPSAGL-CLNASKAEA 350
T+V+++ L+ C CD + N +H ++ +K P AGL C +A+
Sbjct: 632 TLVKKMEPDSLVHCTCDCDVRLLHENMDLASDIHRKHQSPIESKDPEAGLDCKERIQADC 691
Query: 349 SLAESGKD 326
S GK+
Sbjct: 692 SPDSGGKE 699
>At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) contains
Pfam PF02732 : ERCC4 domain; contains TIGRFAM TIGR00596:
DNA repair protein (rad1); almost identical to 5' repair
endonuclease (GI:8926611) [Arabidopsis thaliana]
Length = 956
Score = 29.9 bits (64), Expect = 2.1
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Frame = +3
Query: 45 GLSLNRSQHDAALPSTTPRQERKSSTDYSESRHRTELYPDLRSRDARVKKKTDSIDLRDP 224
G S+ R +H+A + + + ++ +TD + + E + D S KK DP
Sbjct: 492 GSSVGRQEHEALMAAASSIRKLGKTTDMASGNNNPEPHVDKASCTKGKAKK-------DP 544
Query: 225 NGLRRRVSRFECETRLVKSHCLEPPDS--RGSTVSISLPDSA 344
LRR + +T K L P++ + + S S P A
Sbjct: 545 TSLRRSLRSCNKKTTNSKPEILPGPENEEKANEASTSAPQEA 586
>At4g35390.1 68417.m05027 DNA-binding protein-related contains Pfam
domain PF03479: Domain of unknown function (DUF296),
found in AT-hook motifs Pfam:PF02178
Length = 299
Score = 29.5 bits (63), Expect = 2.8
Identities = 25/67 (37%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +3
Query: 48 LSLNRSQHDAALPSTTPRQERKSSTDYSESRHRTELYPDLRSRDARVKKKTDSIDLRD-P 224
+ LNRS+ D A TTP SS S S P R ++ K K +I RD P
Sbjct: 30 MELNRSEADEAKAETTPTGGATSSATASGSSSGRR--PRGRPAGSKNKPKPPTIITRDSP 87
Query: 225 NGLRRRV 245
N LR V
Sbjct: 88 NVLRSHV 94
>At3g47720.1 68416.m05199 expressed protein
Length = 316
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = +3
Query: 72 DAALPSTTPRQERKSSTDYSESRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSR 251
D + TP E + ST+ SESR EL+ D + + + + +L + + + R
Sbjct: 2 DYSKTEETPINEEQGSTNSSESRSNEELFSDCDQQHSSIANEFGLTELPKDDKVYELIYR 61
Query: 252 FECETRLVKSH 284
C+++L SH
Sbjct: 62 -HCQSKLT-SH 70
>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
low similarity to nuclear matrix constituent protein 1
(NMCP1) [Daucus carota] GI:2190187
Length = 1042
Score = 29.1 bits (62), Expect = 3.7
Identities = 22/74 (29%), Positives = 36/74 (48%)
Frame = +3
Query: 102 QERKSSTDYSESRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKS 281
+E K+S D S+ H E + S A KK+ +S+ +D + +S E +++
Sbjct: 95 EEIKASVDESDLTHMREKSAYV-SALAEAKKREESLK-KDVGIAKECISSLEKTLHEMRA 152
Query: 282 HCLEPPDSRGSTVS 323
C E S GST+S
Sbjct: 153 ECAETKVSAGSTMS 166
>At3g01810.1 68416.m00123 expressed protein
Length = 921
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +3
Query: 30 ESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSESRHRTELYPDLRSRDARVKK 194
+S + L +NRS +L S ERK + Y S H T L +++ ++RVKK
Sbjct: 367 KSVRSSLDINRSNSRLSLFS-----ERKEAKVYPNSTHDTTLESKIKNLESRVKK 416
>At2g32590.1 68415.m03979 barren family protein low similarity to
SP|Q9Y7R3 Condensin complex subunit 2 (p105)
{Schizosaccharomyces pombe}; contains Pfam profile
PF05786: Barren protein
Length = 704
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +3
Query: 84 PSTTPRQERKSSTDYSESRHRTELYPDLRSRDARVKKKTDSI-DLRDPNGLRRRVSRFEC 260
P P E KSS ++R + + P+L A ++ D ++P L SR C
Sbjct: 450 PDVQPASEIKSSPPAKKTRKKKQAEPELDFAKALEEEMPDIFAPPKNPKTLLLPASRTPC 509
Query: 261 ETRLVKSHCLEP 296
+T+L + +P
Sbjct: 510 QTKLPEDCHYQP 521
>At2g06140.1 68415.m00675 hypothetical protein
Length = 633
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 124 TIPSPDIGLSYIRTFGAVMHVLRKKPIASISAIQMGFDV 240
TI P G+S +FG +M + KP S+ IQ G D+
Sbjct: 298 TIRLPSGGISANPSFGQLMSIEEAKPRRSLDPIQAGKDL 336
>At5g03560.1 68418.m00314 expressed protein
Length = 241
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Frame = +3
Query: 81 LPSTTPRQERKSSTDYS---ESRHRTELYPDLRSRDARVKKKTDSIDL 215
L +++ R+E+K++ +S ++ H +L P+LR R V+ +TD I++
Sbjct: 64 LTASSKRKEKKTTERFSAVIDAVHDRKLPPELRGRRDFVRSETDIINV 111
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = +3
Query: 87 STTPRQERKSSTDYSESRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFE 257
S +PR+ER S S SR R+ P LRSR + + R + R R S E
Sbjct: 13 SPSPRKERARSRSRSRSRSRSR--PRLRSRSRSLPRPVSPSRSRGRSRSRSRGSEVE 67
>At1g63240.1 68414.m07148 expressed protein
Length = 548
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +1
Query: 61 DRSTTLLYRAQHPARNGSRLQTIPSPDIGLSYIRTFGAVMHVLRKKP 201
D S +Y QH A GS +P PD GL TF + L ++P
Sbjct: 468 DDSAIRMYLEQHFAAPGSADSNLPLPDFGLP---TFSDIKISLNEEP 511
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,804,407
Number of Sequences: 28952
Number of extensions: 374392
Number of successful extensions: 961
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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