Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_K17
(796 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 119 2e-27
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 78 8e-15
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 78 8e-15
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 77 1e-14
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 74 1e-13
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 69 3e-12
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 67 1e-11
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 67 1e-11
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 66 2e-11
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 66 2e-11
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 66 2e-11
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 65 4e-11
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 65 6e-11
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 65 6e-11
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 65 6e-11
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 64 1e-10
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 64 1e-10
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 63 2e-10
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 62 3e-10
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 62 4e-10
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 61 7e-10
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 61 7e-10
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 60 1e-09
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 58 5e-09
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 58 5e-09
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 58 7e-09
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 58 9e-09
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 58 9e-09
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 58 9e-09
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 57 1e-08
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 57 2e-08
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 57 2e-08
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 56 2e-08
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 56 2e-08
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 56 3e-08
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 56 4e-08
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 55 6e-08
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 54 1e-07
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 54 1e-07
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 54 1e-07
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 54 1e-07
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 54 1e-07
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 53 2e-07
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 53 3e-07
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 53 3e-07
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 53 3e-07
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 52 3e-07
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 52 6e-07
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 52 6e-07
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 51 1e-06
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 50 1e-06
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 50 2e-06
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 50 2e-06
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 50 2e-06
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 50 2e-06
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 50 2e-06
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 36 3e-06
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 48 7e-06
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 48 9e-06
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 47 2e-05
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 46 4e-05
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 46 4e-05
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 43 3e-04
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 42 5e-04
At4g35740.2 68417.m05073 DNA helicase (RECQl3) identical to DNA ... 41 0.001
At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA ... 41 0.001
At1g60930.1 68414.m06858 DNA helicase, putative strong similarit... 40 0.001
At1g12700.1 68414.m01473 helicase domain-containing protein / pe... 40 0.002
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila... 39 0.003
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 39 0.004
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 37 0.013
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 36 0.023
At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative simila... 36 0.031
At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative 35 0.072
At4g40020.1 68417.m05666 hypothetical protein 34 0.095
At3g05110.1 68416.m00555 hypothetical protein 33 0.22
At3g52220.1 68416.m05737 expressed protein 33 0.29
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 32 0.50
At3g05060.1 68416.m00549 SAR DNA-binding protein, putative stron... 31 0.67
At3g11450.1 68416.m01396 DNAJ heat shock N-terminal domain-conta... 31 1.2
At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel factory-r... 30 1.5
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof... 30 1.5
At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative simila... 30 2.0
At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low si... 30 2.0
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 29 2.7
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 29 2.7
At1g33390.1 68414.m04133 helicase domain-containing protein simi... 29 2.7
At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identi... 28 8.2
At3g26050.1 68416.m03244 expressed protein 28 8.2
At2g15270.1 68415.m01741 expressed protein 28 8.2
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 119 bits (287), Expect = 2e-27
Identities = 59/130 (45%), Positives = 80/130 (61%)
Frame = -3
Query: 626 AHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTV 447
AHRL ++ G+ G+KAAELHG L Q QRLDSL+ FR+Q+ D L+ATDVAARGLDI GV TV
Sbjct: 425 AHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDVAARGLDIIGVQTV 484
Query: 446 INFTLPATLEHYIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSRQIPPDI 267
IN+ P ++ Y+H V+ + +R+L+K I K+ +KSR IP
Sbjct: 485 INYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVIAKKVGSKLKSRVIPEQS 544
Query: 266 VAKXQGETDQ 237
+ K D+
Sbjct: 545 IVKWSQIIDE 554
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 723 RGASATREAMLAALVCRTFRDRTVVFVQTK 634
R A +EA+L +L RTF+ + ++F TK
Sbjct: 393 RTREANQEAVLLSLCTRTFKSKVIIFSGTK 422
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 77.8 bits (183), Expect = 8e-15
Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 1/163 (0%)
Frame = -3
Query: 617 LHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINF 438
L ++L LG +A + G + Q +RL +L +F+ + ++LV TDVA+RGLDIP V+ VIN+
Sbjct: 276 LALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVASRGLDIPSVDVVINY 335
Query: 437 TLPATLEHYIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSRQIPPDIVAK 258
+P + YIH +SL + E I K K + D V
Sbjct: 336 DIPTNSKDYIHRVGRTARAGRSGVGISLVNQYELEWYIQIEKLIGKKLPEYPAEEDEVLS 395
Query: 257 XQGETDQTRTGDCRNSRR-GIRREADEQDGEANRQIRGRPQEG 132
+ + N + G R+ E D E+ R + G G
Sbjct: 396 LLERVAEAKKLSAMNMKESGGRKRRGEDDEESERFLGGNKDRG 438
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 77.8 bits (183), Expect = 8e-15
Identities = 39/75 (52%), Positives = 46/75 (61%)
Frame = -3
Query: 629 QAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNT 450
+A RL L G KA +HG Q +R SL F+E +LVATDVAARGLDIP V
Sbjct: 378 EAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEV 437
Query: 449 VINFTLPATLEHYIH 405
VIN+T P T E Y+H
Sbjct: 438 VINYTFPLTTEDYVH 452
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 77.4 bits (182), Expect = 1e-14
Identities = 41/139 (29%), Positives = 69/139 (49%)
Frame = -3
Query: 644 CRPSGQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDI 465
C +H L + GV+A +HG +Q R ++ F+ + DVLVATDVA++GLD
Sbjct: 355 CENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDF 414
Query: 464 PGVNTVINFTLPATLEHYIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSR 285
P + VIN+ +P +E+Y+H + + + + +K + K R
Sbjct: 415 PDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQR 474
Query: 284 QIPPDIVAKXQGETDQTRT 228
IPP ++A+ G ++T T
Sbjct: 475 -IPP-VLAELNGPMEETET 491
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 73.7 bits (173), Expect = 1e-13
Identities = 40/139 (28%), Positives = 67/139 (48%)
Frame = -3
Query: 644 CRPSGQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDI 465
C +H L + GV+A +HG +Q R ++ F+ + DVLVATDVA++GLD
Sbjct: 404 CENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGLDF 463
Query: 464 PGVNTVINFTLPATLEHYIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSR 285
P + VIN+ +PA +E+Y+H + + + +K + K R
Sbjct: 464 PDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQR 523
Query: 284 QIPPDIVAKXQGETDQTRT 228
IPP ++A+ ++ T
Sbjct: 524 -IPP-VLAELNDPMEEAET 540
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 69.3 bits (162), Expect = 3e-12
Identities = 40/120 (33%), Positives = 62/120 (51%)
Frame = -3
Query: 650 SSCRPSGQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGL 471
S+CR RL +ML L V+ +H +Q RL +L +F+ + +L+ATDVA+RGL
Sbjct: 310 STCRT---CQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKSGKVPILLATDVASRGL 366
Query: 470 DIPGVNTVINFTLPATLEHYIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVK 291
DIP V+ VIN+ +P Y+H VS+ E + L+ I + K ++
Sbjct: 367 DIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIHKIEEEVGKKME 426
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 66.9 bits (156), Expect = 1e-11
Identities = 35/92 (38%), Positives = 50/92 (54%)
Frame = -3
Query: 587 KAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYI 408
K LHG ++Q QR +L FR+ +LVATDVAARGLD+P V+ VI++ LP E ++
Sbjct: 386 KCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFV 445
Query: 407 HXXXXXXXXXXXXXXVSLAGEGERNLVKSIVK 312
H + + G+ + VK I K
Sbjct: 446 HRTGRTGRAGKKGSAILIHGQDQTRAVKMIEK 477
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 66.9 bits (156), Expect = 1e-11
Identities = 34/74 (45%), Positives = 45/74 (60%)
Frame = -3
Query: 626 AHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTV 447
A L L + G A +HG Q +R +LK F+ + +LVATDVAARGLDIP V V
Sbjct: 431 ADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHV 490
Query: 446 INFTLPATLEHYIH 405
+NF LP ++ Y+H
Sbjct: 491 VNFDLPNDIDDYVH 504
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 66.5 bits (155), Expect = 2e-11
Identities = 34/106 (32%), Positives = 55/106 (51%)
Frame = -3
Query: 584 AAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 405
AA +HG +QP+R + L +FR + VLVATDVAARGLD+ + V+N+ P +E Y+H
Sbjct: 429 AAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVH 488
Query: 404 XXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSRQIPPDI 267
+ G+ + ++K ++++PP I
Sbjct: 489 RIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEG--ANQRVPPQI 532
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 66.5 bits (155), Expect = 2e-11
Identities = 34/106 (32%), Positives = 55/106 (51%)
Frame = -3
Query: 584 AAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 405
AA +HG +QP+R + L +FR + VLVATDVAARGLD+ + V+N+ P +E Y+H
Sbjct: 429 AAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVH 488
Query: 404 XXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSRQIPPDI 267
+ G+ + ++K ++++PP I
Sbjct: 489 RIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEG--ANQRVPPQI 532
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 66.5 bits (155), Expect = 2e-11
Identities = 34/106 (32%), Positives = 55/106 (51%)
Frame = -3
Query: 584 AAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 405
AA +HG +QP+R + L +FR + VLVATDVAARGLD+ + V+N+ P +E Y+H
Sbjct: 429 AAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVH 488
Query: 404 XXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSRQIPPDI 267
+ G+ + ++K ++++PP I
Sbjct: 489 RIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEG--ANQRVPPQI 532
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 65.3 bits (152), Expect = 4e-11
Identities = 33/74 (44%), Positives = 46/74 (62%)
Frame = -3
Query: 626 AHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTV 447
A L L + G A +HG +Q +R +L+ F+ + +LVATDVAARGLDIP V V
Sbjct: 418 ADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHV 477
Query: 446 INFTLPATLEHYIH 405
+NF LP ++ Y+H
Sbjct: 478 VNFDLPNDIDDYVH 491
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 64.9 bits (151), Expect = 6e-11
Identities = 33/106 (31%), Positives = 54/106 (50%)
Frame = -3
Query: 584 AAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 405
AA +HG +Q +R D L +FR + VLVATDVAARGLD+ + V+N+ P +E Y+H
Sbjct: 500 AAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVH 559
Query: 404 XXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSRQIPPDI 267
+ G+ + ++K ++++PP +
Sbjct: 560 RIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEG--ANQKVPPQV 603
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 64.9 bits (151), Expect = 6e-11
Identities = 29/61 (47%), Positives = 42/61 (68%)
Frame = -3
Query: 587 KAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYI 408
K LHG ++Q QR +L FR+ ++LVATDVAARGLD+P V+ +I++ LP E ++
Sbjct: 374 KCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFV 433
Query: 407 H 405
H
Sbjct: 434 H 434
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 64.9 bits (151), Expect = 6e-11
Identities = 32/67 (47%), Positives = 42/67 (62%)
Frame = -3
Query: 605 LGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPA 426
L G + LHG +Q QR SL+ FR ++ +VLVATDV RG+DIP V VIN+ +P
Sbjct: 596 LDKAGYRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPK 655
Query: 425 TLEHYIH 405
+E Y H
Sbjct: 656 HIEMYTH 662
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 64.1 bits (149), Expect = 1e-10
Identities = 36/105 (34%), Positives = 51/105 (48%)
Frame = -3
Query: 626 AHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTV 447
A L L M A +HG Q +R +L+ F+ + +LVATDVAARGLDIP V V
Sbjct: 421 ADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHV 480
Query: 446 INFTLPATLEHYIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVK 312
+NF LP ++ Y+H + E L +S+ +
Sbjct: 481 VNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAE 525
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 64.1 bits (149), Expect = 1e-10
Identities = 36/105 (34%), Positives = 51/105 (48%)
Frame = -3
Query: 626 AHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTV 447
A L L M A +HG Q +R +L+ F+ + +LVATDVAARGLDIP V V
Sbjct: 421 ADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHV 480
Query: 446 INFTLPATLEHYIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVK 312
+NF LP ++ Y+H + E L +S+ +
Sbjct: 481 VNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAE 525
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/68 (41%), Positives = 43/68 (63%)
Frame = -3
Query: 608 MLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLP 429
+L +LG+ L + Q RL S+ RFR + +L+ATD+ ARG+DI V T+I++ LP
Sbjct: 521 LLKILGLDVCTLFSEMKQRARLKSIDRFRASENGILIATDLVARGIDIKNVRTIIHYKLP 580
Query: 428 ATLEHYIH 405
+ E Y+H
Sbjct: 581 HSAEVYVH 588
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 62.5 bits (145), Expect = 3e-10
Identities = 30/57 (52%), Positives = 41/57 (71%)
Frame = -3
Query: 575 LHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 405
LHG ++Q QR +L FR+ + VLVATDVA+RGLDIP V+ VI++ LP E ++H
Sbjct: 380 LHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVH 436
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 62.1 bits (144), Expect = 4e-10
Identities = 27/71 (38%), Positives = 45/71 (63%)
Frame = -3
Query: 617 LHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINF 438
+ L + K A LHG +Q R+++L++F+ VL+ATDVAARGLDI + TV+N+
Sbjct: 489 IEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNY 548
Query: 437 TLPATLEHYIH 405
+ ++ ++H
Sbjct: 549 DIAKDMDMHVH 559
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 61.3 bits (142), Expect = 7e-10
Identities = 41/120 (34%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Frame = -3
Query: 620 RLHVMLGMLG---VKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNT 450
RL +L G +KA E G LNQ R LK FR+ VLVA+D RG+D+ GV
Sbjct: 340 RLCKLLNFFGDPKIKAKEYSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTN 399
Query: 449 VINFTLPATLEHYIHXXXXXXXXXXXXXXVSLAGEGE-RNLVKSIVKRASKPVKSRQIPP 273
VIN+ +P + +IH +L E R K + K S IPP
Sbjct: 400 VINYDMPPFAKTFIHRAGRTARAGQAGRCFTLLSNHEVRRFSKLLEKVGSDSCPIYPIPP 459
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 61.3 bits (142), Expect = 7e-10
Identities = 30/67 (44%), Positives = 41/67 (61%)
Frame = -3
Query: 605 LGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPA 426
L M G A +HG +Q +R L FR ++ ++ ATDVAARGLD+ V VIN+ P
Sbjct: 364 LRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPG 423
Query: 425 TLEHYIH 405
+LE Y+H
Sbjct: 424 SLEDYVH 430
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/67 (43%), Positives = 40/67 (59%)
Frame = -3
Query: 605 LGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPA 426
L M G A +HG Q +R L F+ ++ ++ ATDVAARGLD+ + V+N+ P
Sbjct: 430 LRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPN 489
Query: 425 TLEHYIH 405
TLE YIH
Sbjct: 490 TLEDYIH 496
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 58.4 bits (135), Expect = 5e-09
Identities = 28/60 (46%), Positives = 38/60 (63%)
Frame = -3
Query: 584 AAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 405
A +HG Q +R L +FR ++ VL+ATDVAARGLDI + VIN+ P +E Y+H
Sbjct: 706 AVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVH 765
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 58.4 bits (135), Expect = 5e-09
Identities = 31/99 (31%), Positives = 50/99 (50%)
Frame = -3
Query: 593 GVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEH 414
G+ +AE+HG L + R LK+F+ + VLV +++ARGLD+ + V+N LP H
Sbjct: 431 GMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNELSARGLDVAECDLVVNLELPTDAVH 490
Query: 413 YIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKP 297
Y H V++ E + +VK + K+ P
Sbjct: 491 YAHRAGRTGRLGRKGTVVTVCEESQVFIVKKMEKQLGLP 529
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 58.0 bits (134), Expect = 7e-09
Identities = 28/75 (37%), Positives = 39/75 (52%)
Frame = -3
Query: 641 RPSGQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIP 462
+ A ++H L +G +HG L + R +K F+E VL+ATDV ARG D
Sbjct: 348 KTKASAQKVHKALAEMGYDVTSVHGNLTESDRDKIVKEFKECLTQVLIATDVIARGFDQQ 407
Query: 461 GVNTVINFTLPATLE 417
VN V+N+ LP E
Sbjct: 408 RVNLVVNYNLPTKYE 422
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 57.6 bits (133), Expect = 9e-09
Identities = 24/57 (42%), Positives = 37/57 (64%)
Frame = -3
Query: 575 LHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 405
+H ++Q +RL K F+E +LVATD+ RG+DI VN VIN+ +P + + Y+H
Sbjct: 318 IHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLH 374
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 57.6 bits (133), Expect = 9e-09
Identities = 24/57 (42%), Positives = 37/57 (64%)
Frame = -3
Query: 575 LHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 405
+H ++Q +RL K F+E +LVATD+ RG+DI VN VIN+ +P + + Y+H
Sbjct: 235 IHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLH 291
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 57.6 bits (133), Expect = 9e-09
Identities = 24/57 (42%), Positives = 37/57 (64%)
Frame = -3
Query: 575 LHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 405
+H ++Q +RL K F+E +LVATD+ RG+DI VN VIN+ +P + + Y+H
Sbjct: 318 IHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLH 374
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 57.2 bits (132), Expect = 1e-08
Identities = 28/75 (37%), Positives = 44/75 (58%)
Frame = -3
Query: 629 QAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNT 450
+A L+ L ++A +H L +R +++ +FR + VL+ATDV ARG+D G+N
Sbjct: 392 RAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATDVIARGMDFKGINC 451
Query: 449 VINFTLPATLEHYIH 405
VIN+ P + YIH
Sbjct: 452 VINYDFPDSASAYIH 466
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 56.8 bits (131), Expect = 2e-08
Identities = 34/110 (30%), Positives = 52/110 (47%)
Frame = -3
Query: 593 GVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEH 414
GVKA +HG +R D + F + VLV+T V RG+D+ V VI F +P+T++
Sbjct: 382 GVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKE 441
Query: 413 YIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSRQIPPDIV 264
YIH + E +RNL +V A+ IP +++
Sbjct: 442 YIHVIGRASRMGEKGTAIVFVNEDDRNLFPDLV--AALKSSGAAIPKELI 489
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 56.8 bits (131), Expect = 2e-08
Identities = 34/110 (30%), Positives = 52/110 (47%)
Frame = -3
Query: 593 GVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEH 414
GVKA +HG +R D + F + VLV+T V RG+D+ V VI F +P+T++
Sbjct: 245 GVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKE 304
Query: 413 YIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSRQIPPDIV 264
YIH + E +RNL +V A+ IP +++
Sbjct: 305 YIHVIGRASRMGEKGTAIVFVNEDDRNLFPDLV--AALKSSGAAIPKELI 352
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 56.4 bits (130), Expect = 2e-08
Identities = 32/106 (30%), Positives = 54/106 (50%)
Frame = -3
Query: 581 AELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIHX 402
+ +HG Q +R D + +FR ++ VL+A+DV ARG+D+ V+ VIN+ +P E YIH
Sbjct: 289 SSMHGDKRQKERDDIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHR 348
Query: 401 XXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSRQIPPDIV 264
++ + +K I + K R++P D+V
Sbjct: 349 IGRAGRFGREGVAINFVKSSDMKDLKDIERHYG--TKIREMPADLV 392
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 56.4 bits (130), Expect = 2e-08
Identities = 32/117 (27%), Positives = 53/117 (45%)
Frame = -3
Query: 575 LHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIHXXX 396
LHG +Q R ++ F+ ++L+AT VAARGLD+ + V+NF P E Y+H
Sbjct: 806 LHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVG 865
Query: 395 XXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSRQIPPDIVAKXQGETDQTRTG 225
V+ E + +VK + + + +P D+ A G + + G
Sbjct: 866 RTGRAGRKGCAVTFISEDDAKYAPDLVK--ALELSEQPVPDDLKALADGFMVKVKQG 920
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 56.0 bits (129), Expect = 3e-08
Identities = 25/64 (39%), Positives = 36/64 (56%)
Frame = -3
Query: 596 LGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLE 417
L K LHG++ Q R + F+ ++ VL++TDVAARGLD P V +I + P
Sbjct: 372 LKCKTFRLHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEAT 431
Query: 416 HYIH 405
Y+H
Sbjct: 432 EYVH 435
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 55.6 bits (128), Expect = 4e-08
Identities = 26/68 (38%), Positives = 39/68 (57%)
Frame = -3
Query: 608 MLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLP 429
+LG L + E+H Q R FR+ ++ +LV +DV+ARG+D P V+ V+ LP
Sbjct: 357 LLGKLSLNVREIHSRKPQSYRTRVSDEFRKSKSIILVTSDVSARGVDYPDVSLVVQMGLP 416
Query: 428 ATLEHYIH 405
+ E YIH
Sbjct: 417 SDREQYIH 424
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 54.8 bits (126), Expect = 6e-08
Identities = 26/68 (38%), Positives = 38/68 (55%)
Frame = -3
Query: 608 MLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLP 429
+L L + E+H Q R FR+ +A +LV +DV+ARG+D P V+ V+ LP
Sbjct: 659 LLSQLSLNVREIHSRKPQSYRTRVSDEFRKSKAIILVTSDVSARGVDYPDVSLVVQMGLP 718
Query: 428 ATLEHYIH 405
+ E YIH
Sbjct: 719 SDREQYIH 726
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 54.0 bits (124), Expect = 1e-07
Identities = 25/56 (44%), Positives = 36/56 (64%)
Frame = -3
Query: 572 HGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 405
HG ++Q R +L F E + VL+ TDVAARGLDIPG++ V+ + P + +IH
Sbjct: 300 HGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIH 355
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 53.6 bits (123), Expect = 1e-07
Identities = 24/62 (38%), Positives = 38/62 (61%)
Frame = -3
Query: 590 VKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHY 411
V +++HG ++Q +R + F + + +L+ TDVAARGLDIP V+ +I + P Y
Sbjct: 359 VDVSDIHGGMDQNRRTKTFFDFMKAKKGILLCTDVAARGLDIPSVDWIIQYDPPDKPTEY 418
Query: 410 IH 405
IH
Sbjct: 419 IH 420
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 53.6 bits (123), Expect = 1e-07
Identities = 24/56 (42%), Positives = 36/56 (64%)
Frame = -3
Query: 572 HGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 405
HG ++Q R ++ FR + VL+ TD+ ARG+D+ V+ VINF LP E+Y+H
Sbjct: 309 HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLH 364
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 53.6 bits (123), Expect = 1e-07
Identities = 24/56 (42%), Positives = 36/56 (64%)
Frame = -3
Query: 572 HGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 405
HG ++Q R ++ FR + VL+ TD+ ARG+D+ V+ VINF LP E+Y+H
Sbjct: 311 HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLH 366
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 53.6 bits (123), Expect = 1e-07
Identities = 24/56 (42%), Positives = 36/56 (64%)
Frame = -3
Query: 572 HGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 405
HG ++Q R ++ FR + VL+ TD+ ARG+D+ V+ VINF LP E+Y+H
Sbjct: 309 HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLH 364
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/59 (42%), Positives = 36/59 (61%)
Frame = -3
Query: 581 AELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 405
+ +HG + Q +R + FR + VL+ TDV ARG+D+ V+ VIN+ LP E YIH
Sbjct: 302 SSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIH 360
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 52.8 bits (121), Expect = 3e-07
Identities = 26/68 (38%), Positives = 36/68 (52%)
Frame = -3
Query: 608 MLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLP 429
+LG L + E+H Q R FR+ + +LV +DV+ARG+D P V V+ LP
Sbjct: 331 LLGELNLNVREIHSRKPQSYRTRVSNEFRKSKGLILVTSDVSARGVDYPDVTLVLQVGLP 390
Query: 428 ATLEHYIH 405
E YIH
Sbjct: 391 KDREQYIH 398
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 52.8 bits (121), Expect = 3e-07
Identities = 24/57 (42%), Positives = 34/57 (59%)
Frame = -3
Query: 575 LHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 405
L G +N R SL R+ +LV+TD+AARG+D+P + NF LP T+ Y+H
Sbjct: 371 LEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLH 427
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 52.8 bits (121), Expect = 3e-07
Identities = 24/57 (42%), Positives = 34/57 (59%)
Frame = -3
Query: 575 LHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 405
L G +N R SL R+ +LV+TD+AARG+D+P + NF LP T+ Y+H
Sbjct: 214 LEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLH 270
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 52.4 bits (120), Expect = 3e-07
Identities = 39/110 (35%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Frame = -3
Query: 575 LHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIHXXX 396
LHG + Q QR +L FR + LVAT+VAARGLDI V +I P +E YIH
Sbjct: 376 LHGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSG 435
Query: 395 XXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSRQIP-PDIVAKXQG 249
V+L + ++ V I K A + P PD +A+ G
Sbjct: 436 RTGRAGNTGVAVTLY-DSRKSSVSRIEKEAGIKFEHLAAPQPDEIARSGG 484
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 51.6 bits (118), Expect = 6e-07
Identities = 28/80 (35%), Positives = 35/80 (43%)
Frame = -3
Query: 644 CRPSGQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDI 465
C + L + LG +H + Q R FR LV TD+ RG+DI
Sbjct: 368 CNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDI 427
Query: 464 PGVNTVINFTLPATLEHYIH 405
VN VINF P T E Y+H
Sbjct: 428 QAVNVVINFDFPRTSESYLH 447
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 51.6 bits (118), Expect = 6e-07
Identities = 28/80 (35%), Positives = 35/80 (43%)
Frame = -3
Query: 644 CRPSGQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDI 465
C + L + LG +H + Q R FR LV TD+ RG+DI
Sbjct: 368 CNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDI 427
Query: 464 PGVNTVINFTLPATLEHYIH 405
VN VINF P T E Y+H
Sbjct: 428 QAVNVVINFDFPRTSESYLH 447
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 50.8 bits (116), Expect = 1e-06
Identities = 28/80 (35%), Positives = 35/80 (43%)
Frame = -3
Query: 644 CRPSGQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDI 465
C + L + LG +H + Q R FR LV TD+ RG+DI
Sbjct: 398 CNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGIDI 457
Query: 464 PGVNTVINFTLPATLEHYIH 405
VN VINF P T E Y+H
Sbjct: 458 QAVNVVINFDFPRTSESYLH 477
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 50.4 bits (115), Expect = 1e-06
Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 3/142 (2%)
Frame = -3
Query: 590 VKAAELHGALNQPQRLDSLKRFREQQAD--VLVATDVAARGLDIPGVNTVINFTLPATLE 417
+ HG + QR+++LK+F++++ D LV TD+AARGLD+ V+ V+ F P
Sbjct: 395 ISTVNYHGEVPAEQRVENLKKFKDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDFPKNSI 453
Query: 416 HYIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSRQIPPDIVAKXQGETDQ 237
Y+H SL ++ L I + + D V + T
Sbjct: 454 DYLHRTGRTARMGAKGKVTSLVSRKDQMLAARIEEAMRNNESLESLTTDNVRRDAARTHI 513
Query: 236 TR-TGDCRNSRRGIRREADEQD 174
T+ G R + ++ + +D
Sbjct: 514 TQEKGRSVKQIREVSKQRNSRD 535
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 50.0 bits (114), Expect = 2e-06
Identities = 37/126 (29%), Positives = 49/126 (38%)
Frame = -3
Query: 644 CRPSGQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDI 465
C + L + LG +H + Q R FR LV TD+ RG+DI
Sbjct: 375 CNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDI 434
Query: 464 PGVNTVINFTLPATLEHYIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSR 285
VN VINF P E Y+H V+L +R + I + +K
Sbjct: 435 QAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIK-- 492
Query: 284 QIPPDI 267
QIPP I
Sbjct: 493 QIPPHI 498
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 50.0 bits (114), Expect = 2e-06
Identities = 37/126 (29%), Positives = 49/126 (38%)
Frame = -3
Query: 644 CRPSGQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDI 465
C + L + LG +H + Q R FR LV TD+ RG+DI
Sbjct: 375 CNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDI 434
Query: 464 PGVNTVINFTLPATLEHYIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSR 285
VN VINF P E Y+H V+L +R + I + +K
Sbjct: 435 QAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIK-- 492
Query: 284 QIPPDI 267
QIPP I
Sbjct: 493 QIPPHI 498
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 50.0 bits (114), Expect = 2e-06
Identities = 28/105 (26%), Positives = 48/105 (45%)
Frame = -3
Query: 539 SLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIHXXXXXXXXXXXXXXV 360
S+ F+ ++L+AT VAARGLD+ + V+NF P E Y+H V
Sbjct: 656 SISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAV 715
Query: 359 SLAGEGERNLVKSIVKRASKPVKSRQIPPDIVAKXQGETDQTRTG 225
+ E + +VK + + + +P D+ A +G + + G
Sbjct: 716 TFISEDDAKYAPDLVK--ALELSEQPVPDDVKAVAEGFMAKVKQG 758
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 49.6 bits (113), Expect = 2e-06
Identities = 31/128 (24%), Positives = 57/128 (44%)
Frame = -3
Query: 617 LHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINF 438
++ +L + + E+H Q R F+E +LV +DV+ARG++ P V VI
Sbjct: 650 MYTLLREMKLNVREIHARKPQLHRTCVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQV 709
Query: 437 TLPATLEHYIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSRQIPPDIVAK 258
+P+ E YIH + L ER + + +P+ + PD+ ++
Sbjct: 710 GIPSDREQYIHRLGRTGREGKGGKGLLLIAPWERYFLDELKDLPLEPIPA----PDLDSR 765
Query: 257 XQGETDQT 234
+ + DQ+
Sbjct: 766 VKHQVDQS 773
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/62 (33%), Positives = 40/62 (64%)
Frame = -3
Query: 590 VKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHY 411
++ + +G ++Q R + RFR ++ +L+ TD+AARG+DIP ++ VIN+ P + +
Sbjct: 296 IEPSVCYGDMDQDARKIHVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPRPKIF 355
Query: 410 IH 405
+H
Sbjct: 356 VH 357
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 35.9 bits (79), Expect(2) = 3e-06
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = -3
Query: 620 RLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATD 489
RL + L G+K+A L+G L Q RL L++F D L+ATD
Sbjct: 316 RLKLFLEKFGIKSAILNGELPQNSRLHILEQFNAGLFDYLIATD 359
Score = 32.7 bits (71), Expect(2) = 3e-06
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -3
Query: 479 RGLDIPGVNTVINFTLPATLEHYIH 405
RG+D V+TVINF +P ++ YIH
Sbjct: 398 RGIDFKKVHTVINFDMPQSVTGYIH 422
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 48.0 bits (109), Expect = 7e-06
Identities = 31/128 (24%), Positives = 56/128 (43%)
Frame = -3
Query: 617 LHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINF 438
++ +L + + E+H Q R F+E +LV +DV+ARG++ P V VI
Sbjct: 603 MYTLLREMKLNVREIHARKPQLHRTRVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQV 662
Query: 437 TLPATLEHYIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSRQIPPDIVAK 258
+P+ E YIH + L ER + + +P+ + PD+ +
Sbjct: 663 GIPSDREQYIHRLGRTGREGKGGEGLLLIAPWERYFLDELKDLPLEPIPA----PDLDSI 718
Query: 257 XQGETDQT 234
+ + DQ+
Sbjct: 719 VKHQVDQS 726
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 47.6 bits (108), Expect = 9e-06
Identities = 22/57 (38%), Positives = 33/57 (57%)
Frame = -3
Query: 575 LHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 405
+HG + Q R +L F + + L+ TDVAARGLDIPG++ V+ + P + H
Sbjct: 308 IHGDMKQNARDKALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNH 364
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/58 (34%), Positives = 35/58 (60%)
Frame = -3
Query: 578 ELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 405
E+ G ++Q +R + +F + + +L+ T+VAARGLD P V+ ++ + P YIH
Sbjct: 429 EIRGGIDQNKRTPTFLQFIKAETGILLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIH 486
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 45.6 bits (103), Expect = 4e-05
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = -3
Query: 593 GVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDI-PGVNTVINFTLPATLE 417
G+ LHG ++Q +R+ +F E+Q+ VL TDV ARGLD V+ V+ P +
Sbjct: 342 GIPLKSLHGKMSQEKRMGVYSQFIERQS-VLFCTDVLARGLDFDKAVDWVVQVDCPEDVA 400
Query: 416 HYIH 405
YIH
Sbjct: 401 SYIH 404
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -3
Query: 572 HGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGV 456
HG ++Q R +L F E + VL+ TDVAARGLDIPG+
Sbjct: 273 HGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGI 311
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 42.7 bits (96), Expect = 3e-04
Identities = 26/78 (33%), Positives = 38/78 (48%)
Frame = -3
Query: 551 QRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIHXXXXXXXXXXX 372
+R + L FRE V V TD AARG+D+P V+ VI ++ ++H
Sbjct: 462 ERANILADFRET-GGVFVCTDAAARGVDVPNVSHVIQADFASSAVDFLHRIGRTARAGQY 520
Query: 371 XXXVSLAGEGERNLVKSI 318
SL E R+LV++I
Sbjct: 521 GTVTSLYTEANRDLVEAI 538
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = -3
Query: 563 LNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYI 408
+ Q D++ +FR+ +LVAT VA GLDI N V+ F L T+ YI
Sbjct: 707 MKSSQMQDTISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYI 758
>At4g35740.2 68417.m05073 DNA helicase (RECQl3) identical to DNA
Helicase [Arabidopsis thaliana] GI:11121447; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 620
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = -3
Query: 617 LHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINF 438
L V L +G+ +A H LN R L + + ++VAT G+D V V +F
Sbjct: 179 LSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMGIDKKDVRMVCHF 238
Query: 437 TLPATLEHY 411
+P ++E +
Sbjct: 239 NIPKSMESF 247
>At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA
Helicase [Arabidopsis thaliana] GI:11121447; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 713
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = -3
Query: 617 LHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINF 438
L V L +G+ +A H LN R L + + ++VAT G+D V V +F
Sbjct: 272 LSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMGIDKKDVRMVCHF 331
Query: 437 TLPATLEHY 411
+P ++E +
Sbjct: 332 NIPKSMESF 340
>At1g60930.1 68414.m06858 DNA helicase, putative strong similarity
to DNA Helicase recQl4B [Arabidopsis thaliana]
GI:11121451; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00570: HRDC domain
Length = 1024
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/65 (30%), Positives = 38/65 (58%)
Frame = -3
Query: 605 LGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPA 426
L + G KAA HG+++ +R K++ + + +++ AT G++ P V VI+ +LP
Sbjct: 646 LRVFGHKAAFYHGSMDPGKRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPK 705
Query: 425 TLEHY 411
++E Y
Sbjct: 706 SIEGY 710
>At1g12700.1 68414.m01473 helicase domain-containing protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles PF01535: PPR repeat, PF00271:
Helicase conserved C-terminal domain
Length = 828
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/63 (30%), Positives = 34/63 (53%)
Frame = -3
Query: 593 GVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEH 414
G+ +AEL+ L + +R LK+F+ + VLV ++ GL+ + +++ LP H
Sbjct: 639 GMNSAELNRDLRKLRRSSVLKKFKNRDVRVLVTNELLTWGLEDAECDLMVDLELPTDAVH 698
Query: 413 YIH 405
Y H
Sbjct: 699 YAH 701
>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar
to CAF protein [Arabidopsis thaliana] GI:6102610;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF03368:
Domain of unknown function, PF00636: RNase3 domain,
PF00035: Double-stranded RNA binding motif
Length = 1676
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = -3
Query: 536 LKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYI 408
LKRF+ ++ ++LVAT V GLDI VI + LP T+ +I
Sbjct: 564 LKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFI 606
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/78 (26%), Positives = 38/78 (48%)
Frame = -3
Query: 644 CRPSGQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDI 465
C ++ L G KAA HG++ QR ++ + + +++ AT G++
Sbjct: 680 CLSRMDCEKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATVAFGMGINK 739
Query: 464 PGVNTVINFTLPATLEHY 411
P V VI+ +LP ++E Y
Sbjct: 740 PDVRFVIHHSLPKSIEGY 757
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 37.1 bits (82), Expect = 0.013
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = -3
Query: 605 LGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGV 456
L M G A +HG Q +R L F+ ++ ++ ATDVAARGL G+
Sbjct: 430 LRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLVSSGI 479
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 36.3 bits (80), Expect = 0.023
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = -3
Query: 590 VKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHY 411
+ A H L R+ + F + V+VAT GLD V VI+F++P ++E Y
Sbjct: 511 INAKGYHSGLPAKDRVRIQESFCSNKIRVVVATVAFGMGLDKGDVGAVIHFSVPGSMEEY 570
Query: 410 I 408
+
Sbjct: 571 V 571
>At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative similar
to C-terminal half of transcription-repair coupling
factor (TRCF) GB:Q55750 [Synechocystis PCC6803];
contains Pfam profile: helicases conserved C-terminal
domain
Length = 823
Score = 35.9 bits (79), Expect = 0.031
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = -3
Query: 590 VKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVI 444
+ A HG Q ++++RF + + +L+ T++ GLDI NT+I
Sbjct: 507 IDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANTII 555
>At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative
Length = 953
Score = 34.7 bits (76), Expect = 0.072
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = -3
Query: 575 LHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVI 444
LHG + + ++L +FR + +L++T V G+D+P + ++
Sbjct: 802 LHGRMKSDDKEEALNKFRSGETQILLSTQVIEIGVDVPDASMMV 845
>At4g40020.1 68417.m05666 hypothetical protein
Length = 615
Score = 34.3 bits (75), Expect = 0.095
Identities = 19/70 (27%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = -1
Query: 250 EKLIKLEPEIVAILDEEYAEKQMNKMEKQTAKL-EVVLKKDEAQPGPQHEPQRQRDWFQT 74
+KL K+ EI ++EE ++ +N+ E ++ EVV KK E + + + + +++ ++
Sbjct: 359 KKLKKMLSEIEVAMEEE-KQRSLNRQESMPKEVVEVVEKKIEEKEKKEEKKENKKEKKES 417
Query: 73 PKQKREEKER 44
K+K+E E+
Sbjct: 418 KKEKKEHSEK 427
>At3g05110.1 68416.m00555 hypothetical protein
Length = 372
Score = 33.1 bits (72), Expect = 0.22
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = -1
Query: 253 REKLIKLEPEIVAILDEEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQT 74
RE++ LE EE + +M K+T +E LK+ EA+ E + +R +F
Sbjct: 30 RERVSDLEQIQKEDSSEEICTES-ERMRKETELIETSLKQLEARENELREVEAKRKFFDL 88
Query: 73 PKQKREEKER 44
+++ EEKE+
Sbjct: 89 KEKELEEKEK 98
>At3g52220.1 68416.m05737 expressed protein
Length = 237
Score = 32.7 bits (71), Expect = 0.29
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = -1
Query: 208 DEEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQTPKQKREEKER 44
D E +K+ + E++ AK E + D + +HE + RD K K+E+KE+
Sbjct: 174 DVERDQKKDRREERKPAKREKEERHDRREKRERHEKRSARDSDDRKKHKKEKKEK 228
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 31.9 bits (69), Expect = 0.50
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = -3
Query: 590 VKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHY 411
VK H + QR+D ++++ + ++ AT G+D V VI+ TL +E Y
Sbjct: 453 VKTVYYHAGVPAKQRVDVQRKWQTGEVRIVCATIAFGMGIDKADVRFVIHNTLSKAVESY 512
>At3g05060.1 68416.m00549 SAR DNA-binding protein, putative strong
similarity to SAR DNA-binding protein-1 [Pisum sativum]
GI:3132696; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 533
Score = 31.5 bits (68), Expect = 0.67
Identities = 18/75 (24%), Positives = 38/75 (50%)
Frame = -1
Query: 268 SSPNXREKLIKLEPEIVAILDEEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQR 89
S ++K K+E E +EE +EK+ K + + V + K+E + + +
Sbjct: 455 SKKKDKKKKKKVEEEKPE--EEEPSEKKKKKKAEAETEAVVEVAKEEKKKNKKKRKHEEE 512
Query: 88 DWFQTPKQKREEKER 44
+ +TP +K+++KE+
Sbjct: 513 ETTETPAKKKDKKEK 527
>At3g11450.1 68416.m01396 DNAJ heat shock N-terminal
domain-containing protein / cell division
protein-related similar to GlsA [Volvox carteri f.
nagariensis] GI:4633129; contains Pfam profiles PF00226
DnaJ domain, PF00249 Myb-like DNA-binding domain
Length = 663
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Frame = -1
Query: 232 EPEIVAILDEEYAEKQMNKMEKQTAKL----EVVLKKDEAQPGPQHEPQRQRDWFQTPKQ 65
+P IV +EE AEKQ K K AK + + +E + + E +R + Q K+
Sbjct: 311 DPRIVKRKEEEKAEKQQKKDAKIQAKKKQEEDAAIAAEEEKRRKEEEEKRAAESAQQQKK 370
Query: 64 KREEKERL 41
+E +++L
Sbjct: 371 TKEREKKL 378
>At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel
factory-related similar to RNA helicase GB:AAF03534
Length = 1317
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -3
Query: 569 GALNQPQRLDS--LKRFREQQADVLVATDVAARGLDIPGVNTVINF 438
G NQ ++ + ++ FR +++VAT + GLD+ N VI F
Sbjct: 426 GLQNQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRF 471
>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
PF00190: Cupin
Length = 707
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/80 (26%), Positives = 39/80 (48%)
Frame = -1
Query: 283 KYRPISSPNXREKLIKLEPEIVAILDEEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHE 104
K R RE+ K E E +EE K+ + +Q K E +K+E + E
Sbjct: 478 KKREEEEARKREEERKREEEEAKRREEE--RKKREEEAEQARKREEEREKEEEMAKKREE 535
Query: 103 PQRQRDWFQTPKQKREEKER 44
+++++ + +++REE+ER
Sbjct: 536 ERQRKEREEVERKRREEQER 555
>At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative similar
to WRN (Werner syndrome) protein - Mus musculus,
EMBL:AF241636; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00627: UBA/TS-N domain
Length = 858
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = -3
Query: 596 LGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLE 417
+G+KAA + +L + + F + + V+VAT G+D V +I++ +LE
Sbjct: 520 VGLKAAAYNASLPKKHLRQVHQDFHDNKLQVVVATIAFGMGIDKKNVRKIIHYGWLQSLE 579
Query: 416 HY 411
Y
Sbjct: 580 AY 581
>At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low
similarity to RNA helicase/RNAseIII CAF protein
[Arabidopsis thaliana] GI:6102610; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1324
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -3
Query: 536 LKRFREQQADVLVATDVAARGLDIPGVNTVINF 438
L++FR +V+VAT + GLDI V+ VI F
Sbjct: 520 LEKFRAGGFNVIVATSIGEEGLDIMEVDLVICF 552
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 29.5 bits (63), Expect = 2.7
Identities = 8/28 (28%), Positives = 22/28 (78%)
Frame = -1
Query: 127 AQPGPQHEPQRQRDWFQTPKQKREEKER 44
+ PG PQ+ R++F++P+Q+++++++
Sbjct: 91 SSPGSMQMPQQSRNFFESPQQQQQQQQQ 118
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 29.5 bits (63), Expect = 2.7
Identities = 8/28 (28%), Positives = 22/28 (78%)
Frame = -1
Query: 127 AQPGPQHEPQRQRDWFQTPKQKREEKER 44
+ PG PQ+ R++F++P+Q+++++++
Sbjct: 91 SSPGSMQMPQQSRNFFESPQQQQQQQQQ 118
>At1g33390.1 68414.m04133 helicase domain-containing protein similar
to kurz protein [Drosophila melanogaster] GI:5869803;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1237
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = -3
Query: 590 VKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVIN 441
++ L+ L+ +L + +++ V+VAT+VA L IPG+ V++
Sbjct: 647 LRVLPLYAMLSPAAQLRVFEEVEKEERLVVVATNVAETSLTIPGIKYVVD 696
>At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identical
to CLC-d chloride channel protein [Arabidopsis thaliana]
GI:1742959
Length = 792
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +1
Query: 271 SGGICLD---LTGLDARLTIDLTRFLSPSP 351
S G+C++ LT D + IDL FL+PSP
Sbjct: 679 SKGLCIEDIHLTSDDLEMYIDLAPFLNPSP 708
>At3g26050.1 68416.m03244 expressed protein
Length = 533
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/59 (27%), Positives = 21/59 (35%)
Frame = -1
Query: 283 KYRPISSPNXREKLIKLEPEIVAILDEEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQH 107
K RP SS + KLE +V LD + T L + + P P H
Sbjct: 170 KERPPSSSGSKVSSSKLESSVVIELDHSLKNTKKESSSSSTRSLSASKNRSRSPPEPIH 228
>At2g15270.1 68415.m01741 expressed protein
Length = 194
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = -1
Query: 169 KQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQTPKQKREEKERLALTT 29
K+ E ++++E Q + + ++R Q KQK++EK++ TT
Sbjct: 105 KRLKMAEFTIRREEKQKAAEEKTSKKRLKRQKKKQKKQEKKQKPNTT 151
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,970,217
Number of Sequences: 28952
Number of extensions: 208927
Number of successful extensions: 852
Number of sequences better than 10.0: 90
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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