Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_K13
(770 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 186 3e-48
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 184 1e-47
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 44 2e-05
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 28 1.3
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.3
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ... 26 5.2
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.2
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 26 6.9
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 186 bits (453), Expect = 3e-48
Identities = 92/147 (62%), Positives = 107/147 (72%)
Frame = -2
Query: 769 PXDFFVIXSRPFGQRAVXKFXAHXGXTXIAGRFTPGAFTXPDXKLHFXEPRLLIVLDPAQ 590
P D VI SRP+G RAV KF AH G T IAGRFTPG FT + + EPRL+IV DP
Sbjct: 74 PADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRT-YREPRLIIVTDPRA 132
Query: 589 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 410
D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+LLAREVLRLRG +
Sbjct: 133 DAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNI 192
Query: 409 PRDQRWDVVVDLFFYRDPEESEKDEQQ 329
R W+V+ DL+FYRDPEE E++E+Q
Sbjct: 193 SRTTAWEVMPDLYFYRDPEEIEREEEQ 219
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 184 bits (448), Expect = 1e-47
Identities = 90/149 (60%), Positives = 107/149 (71%)
Frame = -2
Query: 769 PXDFFVIXSRPFGQRAVXKFXAHXGXTXIAGRFTPGAFTXPDXKLHFXEPRLLIVLDPAQ 590
P D V+ +R +G RAV KF AH G T IAGRFTPG FT + + EPRL++V DP
Sbjct: 73 PADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRT-YREPRLIVVTDPRA 131
Query: 589 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 410
D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+LLAREVLR+RG L
Sbjct: 132 DAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTL 191
Query: 409 PRDQRWDVVVDLFFYRDPEESEKDEQQAK 323
R WDV+ DL+FYRDPEE E++E+ K
Sbjct: 192 SRSAPWDVMPDLYFYRDPEEVEREEEAKK 220
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 44.4 bits (100), Expect = 2e-05
Identities = 23/76 (30%), Positives = 37/76 (48%)
Frame = -2
Query: 664 GAFTXPDXKLHFXEPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 485
G D K + P L+++L+P ++ EA ++P I + +TD+ R V IP N
Sbjct: 166 GKLIQTDKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPAN 225
Query: 484 TKSSHSIGLMWWLLAR 437
S L+ LL+R
Sbjct: 226 DDSLRCTDLIAGLLSR 241
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +3
Query: 372 NKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 470
N+S+T +++ SR ST RS STS AN H K E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 574 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 464
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 318
Score = 26.2 bits (55), Expect = 5.2
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = -2
Query: 634 HFXEPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD 503
HF +LL+VL H T Y I I NT+ LRF D
Sbjct: 263 HFPSEKLLMVL---LLHGTETMQEYAMIQAINFVNTEQKLRFYD 303
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 466 IGLMWWLLAREVLRLRGVLPRDQRWD 389
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -3
Query: 411 FPVTSAGML--WLICSSTVTLKKVKRM 337
FP S ++ WL +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,733,777
Number of Sequences: 5004
Number of extensions: 50770
Number of successful extensions: 138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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