Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_K13
         (770 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   185   2e-47
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   179   2e-45
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   155   4e-38
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP...    34   0.12 
At5g23690.1 68418.m02777 polynucleotide adenylyltransferase fami...    31   1.1  
At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin fa...    29   4.5  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  185 bits (451), Expect = 2e-47
 Identities = 87/152 (57%), Positives = 108/152 (71%), Gaps = 1/152 (0%)
 Frame = -2

Query: 769 PXDFFVIXSRPFGQRAVXKFXAHXGXTXIAGRFTPGAFTXPDXKLHFXEPRLLIVLDPAQ 590
           P D  V  +RP+GQRAV KF  + G   IAGR TPG FT    +  F EPRLLI+ DP  
Sbjct: 75  PQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTN-QMQTSFSEPRLLILTDPRT 133

Query: 589 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 410
           DHQPI E +  NIP+IA C+TDSP+RFVDI IP N K  HSIG ++WLLAR VL++RG +
Sbjct: 134 DHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 193

Query: 409 PRDQRWDVVVDLFFYRDPEESE-KDEQQAKEQ 317
              Q+WDV+VDLFFYR+PEE++ +DE +A  Q
Sbjct: 194 AAGQKWDVMVDLFFYREPEETKPEDEDEAGPQ 225


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  179 bits (435), Expect = 2e-45
 Identities = 83/150 (55%), Positives = 104/150 (69%)
 Frame = -2

Query: 769 PXDFFVIXSRPFGQRAVXKFXAHXGXTXIAGRFTPGAFTXPDXKLHFXEPRLLIVLDPAQ 590
           P D  V  +RP+GQRAV KF  + G   IAGR TPG FT    +  F EPRLLI+ DP  
Sbjct: 76  PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTN-QMQTSFSEPRLLILTDPRT 134

Query: 589 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 410
           DHQPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLAR VL++RG +
Sbjct: 135 DHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 194

Query: 409 PRDQRWDVVVDLFFYRDPEESEKDEQQAKE 320
              Q+WDV+VDLFFYR+PEE++++  +  E
Sbjct: 195 LAAQKWDVMVDLFFYREPEEAKQEGDEEAE 224


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  155 bits (375), Expect = 4e-38
 Identities = 73/131 (55%), Positives = 89/131 (67%)
 Frame = -2

Query: 769 PXDFFVIXSRPFGQRAVXKFXAHXGXTXIAGRFTPGAFTXPDXKLHFXEPRLLIVLDPAQ 590
           P D  V  +RP+GQRAV KF  + G   IAGR TPG FT    +  F EPRLLI+ DP  
Sbjct: 76  PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTN-QMQTSFSEPRLLILTDPRT 134

Query: 589 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 410
           DHQPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLAR VL++RG +
Sbjct: 135 DHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 194

Query: 409 PRDQRWDVVVD 377
              Q+WDV+V+
Sbjct: 195 LAAQKWDVMVN 205


>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
           identical to SP|Q9GCB9 Mitochondrial ribosomal protein
           S2 {Arabidopsis thaliana}; contains Pfam profile
           PF00318: ribosomal protein S2
          Length = 219

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
 Frame = -2

Query: 685 IAGRFTPGAFTXPDXKLHFXE---PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPL 515
           +   ++P  F     KL F     P  ++V D  +    I EAS + IPV+A+ + + PL
Sbjct: 107 LTNSYSPKKFRSRHKKLCFGPTTMPDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPL 166

Query: 514 RFVD-IAIPCNTKSS 473
            F + I  P   + S
Sbjct: 167 EFFEKITYPVPARDS 181


>At5g23690.1 68418.m02777 polynucleotide adenylyltransferase family
           protein low similarity to SP|P13685 Poly(A) polymerase
           (EC 2.7.7.19) {Escherichia coli O157:H7}; contains Pfam
           profile PF01743: polyA polymerase family protein
          Length = 527

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = -3

Query: 342 RMNNKPRNRLWYQLNQK*LLLSMKTGMKHWSQWLHGLK 229
           +++++PR+R W QLN K L LS     K   + L+GLK
Sbjct: 54  KVSDEPRDREWKQLNSKDLGLSSSMIAKSTRKVLNGLK 91


>At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin
           family protein contains Pfam domain, PF01190: Pollen
           proteins Ole e I family
          Length = 146

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -2

Query: 526 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWD 389
           D  L   ++A+ C TKS   +    +  ++ V  +   +P  +RWD
Sbjct: 49  DHVLEGAEVAVLCITKSGEVVNYQAFTNSKGVYTVAETMPESERWD 94


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,662,270
Number of Sequences: 28952
Number of extensions: 279847
Number of successful extensions: 704
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)