Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_K12
         (806 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)                   29   3.4  
SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)                    29   4.4  
SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06)                 29   4.4  
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)                   29   4.4  
SB_48726| Best HMM Match : E1-E2_ATPase (HMM E-Value=7.7e-07)          29   5.9  
SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)                   29   5.9  
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_37069| Best HMM Match : Ribosomal_S30 (HMM E-Value=8.5)             28   7.7  

>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
          Length = 3616

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/66 (25%), Positives = 34/66 (51%)
 Frame = -1

Query: 260  PFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SLI 81
            P D +  +N+ +VL DNKT  L+   +  +P S   + + +P ++ + S     ++  + 
Sbjct: 2292 PVDAIWIENLNSVLDDNKTLTLANGDR--IPMSPQCKIVFEPHNIDNASPATVSRNGMVY 2349

Query: 80   LHSFGL 63
            + S GL
Sbjct: 2350 MSSSGL 2355


>SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)
          Length = 1650

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = -3

Query: 669 PTTPDLTSISINPLTPY*XGVRAGVKASVVIRGSISVSHPLVTGHG*RVSPPY 511
           P T D+  +SI    PY   V   V+     R SI V HP       +V  PY
Sbjct: 199 PATTDVNQVSIKVRHPYANRVSIKVRHLYFNRVSIKVHHPYANRVSIKVRHPY 251


>SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06)
          Length = 1532

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -1

Query: 260  PFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDS 114
            P D +  +N+ +VL DNKT  L+   +  +P S   + + +P ++ + S
Sbjct: 1384 PVDAIWIENLNSVLDDNKTLTLANGDR--IPMSPTCKVVFEPHNIDNAS 1430


>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
          Length = 2748

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -3

Query: 669  PTTPDLTSISINPLTPY*XGVRAGVKASVVIRGSI--SVSHPLVTG 538
            PT+P++TS S  P   +   ++AG +  VV+  ++  SV  P++ G
Sbjct: 1911 PTSPEMTSRSGQPFKRFTKHIKAGDRLRVVMGSTVLKSVLQPVIQG 1956


>SB_48726| Best HMM Match : E1-E2_ATPase (HMM E-Value=7.7e-07)
          Length = 592

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
 Frame = -1

Query: 380 YKVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLK---DN 210
           + + + DN L T   L +K+    G   +VFD         FDT+    +R   +   DN
Sbjct: 313 HSLTMIDNEL-TGDPLDIKMFEATG---WVFDEPGE-DNKKFDTIAPSTVRPKTREMTDN 367

Query: 209 KTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVK 96
           +  L    I+    SS++ R  V  R + SD   VYVK
Sbjct: 368 QVPLEVGIIRQFPFSSDVQRMTVITRILGSDHMDVYVK 405


>SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)
          Length = 1249

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = -1

Query: 725 LPCDFGYINPIIKSPDSIHQPPQT*HPFPSIP*RR--TRXGFAPGLKPPLSSEAPSAYLT 552
           +P   G +N   ++P     PP   HP P++P RR      FAP  +PP  +  PS    
Sbjct: 699 IPTRTGSVNKPSRAP-----PPVPNHPSPAVPLRREGDTKSFAP-QRPPPPTRTPSGKDR 752

Query: 551 PSS 543
           P S
Sbjct: 753 PHS 755


>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4994

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -1

Query: 260  PFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDS 114
            P D +  +N+ +VL DNKT  L+   +  +P S   + + +P ++ + S
Sbjct: 2286 PVDAIWIENLNSVLDDNKTLTLANGDR--IPMSPQCKVVFEPHNIDNAS 2332


>SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 963

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 672 TPTTPDLTSISINPLTPY 619
           TPT PD+T +SI  L PY
Sbjct: 75  TPTRPDVTQLSITGLKPY 92


>SB_37069| Best HMM Match : Ribosomal_S30 (HMM E-Value=8.5)
          Length = 283

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -3

Query: 606 RAGVKASVVIRGSISVSHPLVTGHG*RVSPPYFQVNDESQASRLISRHSTHT 451
           +A  K S  +RG  S   PL+ GHG R  P   +  + SQ      RHS ++
Sbjct: 142 KARQKHSEAVRGGRS---PLILGHGSRKRPRTVEEEESSQHEIKRERHSMYS 190


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,760,476
Number of Sequences: 59808
Number of extensions: 480502
Number of successful extensions: 1389
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1389
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)