Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_K12
         (806 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.83 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 16/62 (25%), Positives = 21/62 (33%)
 Frame = -1

Query: 722 PCDFGYINPIIKSPDSIHQPPQT*HPFPSIP*RRTRXGFAPGLKPPLSSEAPSAYLTPSS 543
           P     +   ++SP     PP    P P IP      G  P   P +    P+    PS 
Sbjct: 391 PVSMSALVSAVRSPAGGQLPPSAGAPMPPIPNMSNMSGMPP--LPNMPGSMPTMPTMPSM 448

Query: 542 LG 537
            G
Sbjct: 449 AG 450



 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = -2

Query: 754 GXXPLCIKPPSPAISXTSTRSSNPPIP 674
           G  P     P P I   S  S  PP+P
Sbjct: 407 GQLPPSAGAPMPPIPNMSNMSGMPPLP 433


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 738 ASSHPPLRFRXHQPDHQIPRFHTPTTPDLTSISINPLTPY 619
           A+  PPL     + D Q P    P  P+L S +I+ L PY
Sbjct: 635 AAGDPPLTISWLK-DGQSP---FPLPPNLASANISQLDPY 670


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,615
Number of Sequences: 438
Number of extensions: 5095
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)