Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_K12
         (806 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47170.1 68416.m05122 transferase family protein low similari...    35   0.073
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    31   1.2  
At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family...    30   2.1  
At2g42460.1 68415.m05253 meprin and TRAF homology domain-contain...    29   2.7  
At4g29990.1 68417.m04266 light repressible receptor protein kina...    29   3.6  
At3g47590.1 68416.m05181 esterase/lipase/thioesterase family pro...    29   3.6  
At4g20200.1 68417.m02953 terpene synthase/cyclase family protein...    29   4.8  
At3g18360.1 68416.m02335 VQ motif-containing protein contains PF...    29   4.8  
At5g10570.1 68418.m01223 basic helix-loop-helix (bHLH) family pr...    28   6.3  
At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative ...    28   8.4  

>At3g47170.1 68416.m05122 transferase family protein low similarity
           to 10-deacetylbaccatin III-10-O-acetyl transferase Taxus
           cuspidata GI:6746554; contains Pfam profile PF02458
           transferase family
          Length = 468

 Score = 34.7 bits (76), Expect = 0.073
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = -1

Query: 494 NHKLRALLVVIPRILRSPP-PTHPLIEDVVMATNQAIIDYK-VKIADNNLVTHKELALKV 321
           N K    LV + +   SP  PT  ++ +++  T++ I   K + I D NL   KE  +K+
Sbjct: 222 NDKNNPKLVDVEKDCSSPDTPTEDMVREILNITSEDITKLKNIIIEDENLTNEKEKNMKI 281

Query: 320 SSIIGTRVYVFDPSC 276
           +++     YV+   C
Sbjct: 282 TTVEVLAAYVWRARC 296


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/58 (22%), Positives = 26/58 (44%)
 Frame = -2

Query: 778 PXIXWNNIGXXPLCIKPPSPAISXTSTRSSNPPIPYTNHPRLNIHFHQSPDAVLEXGS 605
           P + +++    P+    P P     S+    PP+ Y++ P   +H+H  P + +   S
Sbjct: 634 PVVHYSSPPPPPVYYSSPPPPPVYYSSPPPPPPVHYSSPPPPEVHYHSPPPSPVHYSS 691


>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
           protein
          Length = 421

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = -2

Query: 724 SPAISXTSTRSSNPPIPYTNHPRLNI 647
           +PA S TS  S+ PP PY+++ R+NI
Sbjct: 327 APAPSSTSFSSAPPPPPYSSNGRINI 352


>At2g42460.1 68415.m05253 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 441

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 467 VIPRILRSPPPTHPLIEDVVMATNQAIIDYKVKIADNNLVTHKEL 333
           V P++L       PL E+  +  N+ II  +VK+A+   +T KE+
Sbjct: 273 VEPKMLSFKDYASPLQEEGFLENNKLIIRVEVKVAEEGYLTGKEM 317


>At4g29990.1 68417.m04266 light repressible receptor protein kinase
           identical to light repressible receptor protein kinase
           [Arabidopsis thaliana] gi|1321686|emb|CAA66376
          Length = 876

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -1

Query: 314 IIGTRVYVFDPSCYFSTPPFDTVLYDNI-RTVLKDNKTALLSASIQASLPSSEIYRQLVD 138
           +I TR    +   +  TP FD  +  N+  +V+  N+TA+++  I  + PS  I+  LVD
Sbjct: 104 LIRTRFMYGNYDGFSKTPEFDLYIGANLWESVVLINETAIMTKEIIYTPPSDHIHVCLVD 163


>At3g47590.1 68416.m05181 esterase/lipase/thioesterase family
           protein low similarity to cinnamoyl ester hydrolase CinI
           [Butyrivibrio fibrisolvens] GI:1622732; contains
           Interpro entry IPR000379
          Length = 309

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -1

Query: 296 YVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLV 141
           +V   S Y+ T PF T  + N+R  +K+N+ +   A      PS  I  Q +
Sbjct: 10  FVPQDSPYYKTSPFPTSSFFNVRFPIKNNQISCNKAKNLRMDPSKGIQEQRI 61


>At4g20200.1 68417.m02953 terpene synthase/cyclase family protein
           5-epi-aristolochene synthase, Nicotiana tabacum,
           PATX:G505588
          Length = 604

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +3

Query: 159 LGGRERSLNRCREKSSFVVLKNRPDVVVQYGIEGRS*KVARGIEDVDSGAY 311
           L G   S+ +   K +F  LK+RP +V    I+GR      G ED  S  Y
Sbjct: 464 LAGIFMSMGKMATKEAFEWLKSRPKLVQYLSIKGRLMNDLMGYEDDMSRGY 514


>At3g18360.1 68416.m02335 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 285

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 733 KPPSPAISXTSTRSSNPPIPYTNHPRLNIH 644
           KPPSP+   ++ +  +P I YT+ PR+ IH
Sbjct: 57  KPPSPSSFSSAAKPRHPVIIYTHTPRI-IH 85


>At5g10570.1 68418.m01223 basic helix-loop-helix (bHLH) family
           protein bHLH transcription factor, Arabidopsis thaliana,
           EMBL:AC005167
          Length = 315

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = -1

Query: 722 PCDFGYINPIIKSPDSIHQPPQT*HPFPSIP*RRTRXGFAPGLKPPL-SSEAPSAYLTPS 546
           P     +N I + P  +HQPPQ   P    P   +   + P L+  + SS +P   + P+
Sbjct: 54  PSSSSLMNLISQPPPLLHQPPQPSSPLYDSPPLSSAFDY-PFLEDIIHSSYSPPPLILPA 112

Query: 545 SLGMXKGFRPLI 510
           S      + PL+
Sbjct: 113 SQENTNNYSPLM 124


>At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative
           similar to GTL1 [Arabidopsis thaliana] GI:2664198
          Length = 669

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -1

Query: 596 LKPPLSSEAPSAYLTPSSLGMXKGFRPLIFK*MMNHKLRALLVVIPR--ILRSPPPTHP 426
           L P LSS+ P  Y  P ++       PL        + +  ++ IP+  IL  PPP+HP
Sbjct: 349 LPPSLSSQPPPPYQPPPAVTKRVAEPPLS---TAQSQSQQPIMAIPQQQILPPPPPSHP 404


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,197,067
Number of Sequences: 28952
Number of extensions: 354483
Number of successful extensions: 1072
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)