Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_K09
         (808 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0120 + 15463163-15465250                                         30   1.9  
06_01_1169 + 9996068-9996265,9996356-9998589,9998675-9998926,999...    30   2.5  
12_01_0302 - 2286171-2286341,2286747-2286968                           29   4.4  
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238...    29   5.8  
04_01_0610 - 7997406-7998047,7998379-7998426,8000719-8001143,800...    29   5.8  
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598...    29   5.8  
03_04_0123 + 17475020-17475243,17475367-17475445,17476295-174763...    28   7.6  

>02_03_0120 + 15463163-15465250
          Length = 695

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 706 PPSPAXSDTSTRSSNPPIPYTNHPRLNIHFHQSPDAVLEGVRAG-VKASVVIRGS 545
           PP P+ S +    S PP P+ NH R ++ +      VL GV  G V   +V+ GS
Sbjct: 301 PPPPSPSPSPPPPSPPPPPHPNHRRRHLFY-----KVLGGVLGGMVLLGLVVVGS 350


>06_01_1169 +
           9996068-9996265,9996356-9998589,9998675-9998926,
           9999007-9999117,9999207-9999288,9999563-9999754
          Length = 1022

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -2

Query: 708 SHPPLRXRIHQPDHQIPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPS 541
           S PPLR    QP         P  P    +  +P +P  K+ AP   PP+ +  P+
Sbjct: 584 SPPPLRSPPRQPTPPPSPSQQPPLPTPQPVQASPTSPT-KQHAPPAPPPVQTSPPT 638


>12_01_0302 - 2286171-2286341,2286747-2286968
          Length = 130

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 80  RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 181
           RL+R RK +  D+   G  + +GEKLE  + +E+
Sbjct: 57  RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90


>09_04_0737 -
           19822822-19822973,19823069-19823135,19823666-19823822,
           19824003-19824177,19824364-19824481,19824676-19824874,
           19824983-19825062,19825141-19825257,19825791-19825961,
           19826121-19826597
          Length = 570

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +3

Query: 72  FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 218
           F+VD  G G +  ++++LAV+ G R      CR     VV     DVVV
Sbjct: 93  FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140


>04_01_0610 -
           7997406-7998047,7998379-7998426,8000719-8001143,
           8002301-8002589
          Length = 467

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
 Frame = -2

Query: 723 RPYASSHPPLRXRIHQPDHQIPRFHTP-TTPDLTSISINPLTPY*KEFAPGLKPPLSSEA 547
           RP+   H P     H P H  PR H P   P  T ++        +E   G +P L S A
Sbjct: 407 RPWCRPHTPRPRSPHSPTHPRPRLHHPLPRPTRTGVANVTDDRRGEECNGGSRPLLPSRA 466


>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
            30560292-30560346,30560537-30560613,30561228-30561315,
            30561490-30561593,30562050-30562231,30562347-30563109,
            30563195-30563438,30564513-30564658,30565158-30565283,
            30565404-30565517,30565595-30565762,30566283-30566528,
            30566605-30566767,30566970-30567064,30567274-30567357,
            30567769-30568055,30568359-30568572,30568923-30569140,
            30569386-30569623,30570312-30571118,30571202-30571301,
            30571694-30571737,30571824-30571973
          Length = 1942

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = -3

Query: 239  PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 60
            P F T+LY     ++KD      S+     L S+  Y  L+DP   S D+    + +   
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407

Query: 59   ILHSF 45
            +LHSF
Sbjct: 1408 LLHSF 1412


>03_04_0123 +
           17475020-17475243,17475367-17475445,17476295-17476393,
           17476499-17476682,17477139-17477206,17477530-17477787,
           17477996-17478049,17478149-17478355,17478507-17478633,
           17479409-17479575
          Length = 488

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -1

Query: 703 PSPAXSDTST--RSSNPPIPYTNHPRLNIHFHQSP 605
           PSP  + T      S PP+PY N PR   +   +P
Sbjct: 230 PSPGATGTPNFENVSTPPMPYANSPRSGTNMMNTP 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,245,186
Number of Sequences: 37544
Number of extensions: 474301
Number of successful extensions: 1520
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1513
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)