Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_K09
         (808 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06)          30   2.5  
SB_56721| Best HMM Match : DUF755 (HMM E-Value=0.52)                   29   3.4  
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)                   29   3.4  
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)                29   3.4  
SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06)                 29   4.4  
SB_48726| Best HMM Match : E1-E2_ATPase (HMM E-Value=7.7e-07)          29   5.9  
SB_41939| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)                29   5.9  
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                 29   5.9  
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_30182| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_52889| Best HMM Match : Pex2_Pex12 (HMM E-Value=1)                  28   7.7  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_26014| Best HMM Match : Pex2_Pex12 (HMM E-Value=1)                  28   7.7  

>SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06)
          Length = 295

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 721 PLCIKPPSPAXSDTSTRSSNPPIPYTNHP 635
           P    PP+ A +D     +NPP+P TN P
Sbjct: 222 PTTQTPPTKAPTDPPVPPTNPPVPPTNPP 250


>SB_56721| Best HMM Match : DUF755 (HMM E-Value=0.52)
          Length = 516

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = -2

Query: 645 PTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPPYFQVNDES 466
           P TP   S S  P++P  +   P  +P     +PS  LT +       ++P + +V++E 
Sbjct: 51  PKTPSEPSDSPGPMSPEPEIMTPTPEPSPKHRSPSPKLTKTPTPPSWSLTPLHDEVDEEE 110

Query: 465 QAS 457
           + S
Sbjct: 111 EGS 113


>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2437

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -2

Query: 585  FAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPPYFQVNDESQASRLIS 445
            FA     P SS++PSA  +P+S       SP  F  + E +   +IS
Sbjct: 1096 FATTTMSPTSSQSPSAVTSPTSPRSPSNPSPASFGFHSEDEPVTMIS 1142


>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
          Length = 3616

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/66 (25%), Positives = 34/66 (51%)
 Frame = -3

Query: 236  PFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SLI 57
            P D +  +N+ +VL DNKT  L+   +  +P S   + + +P ++ + S     ++  + 
Sbjct: 2292 PVDAIWIENLNSVLDDNKTLTLANGDR--IPMSPQCKIVFEPHNIDNASPATVSRNGMVY 2349

Query: 56   LHSFGL 39
            + S GL
Sbjct: 2350 MSSSGL 2355


>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
          Length = 796

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/46 (41%), Positives = 22/46 (47%)
 Frame = -2

Query: 663 IPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTP 526
           IPR H PTTP  T  +  P T            P +S+APSA  TP
Sbjct: 271 IPRGHLPTTPSTTPQATPPST------TSQTTAPTASQAPSAGETP 310


>SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06)
          Length = 1532

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -3

Query: 236  PFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDS 90
            P D +  +N+ +VL DNKT  L+   +  +P S   + + +P ++ + S
Sbjct: 1384 PVDAIWIENLNSVLDDNKTLTLANGDR--IPMSPTCKVVFEPHNIDNAS 1430


>SB_48726| Best HMM Match : E1-E2_ATPase (HMM E-Value=7.7e-07)
          Length = 592

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
 Frame = -3

Query: 368 AIIDCKVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLK- 192
           A+  C      +N +T   L +K+    G   +VFD         FDT+    +R   + 
Sbjct: 308 AMATCHSLTMIDNELTGDPLDIKMFEATG---WVFDEPGE-DNKKFDTIAPSTVRPKTRE 363

Query: 191 --DNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVK 72
             DN+  L    I+    SS++ R  V  R + SD   VYVK
Sbjct: 364 MTDNQVPLEVGIIRQFPFSSDVQRMTVITRILGSDHMDVYVK 405


>SB_41939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 819

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -1

Query: 703 PSPAXSDTSTR-SSNPPIPY 647
           PS    +TSTR SSNPP+PY
Sbjct: 680 PSGKSEETSTRESSNPPLPY 699


>SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)
          Length = 1671

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 693  RXRIHQPDHQIPRFHTPTTPDLTSISINPLTPY 595
            + R+HQ + Q+ R+     P L+   I+P TPY
Sbjct: 1265 KLRLHQSEPQMDRYGNLKRPTLSHERISPSTPY 1297


>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 305

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 21/70 (30%), Positives = 27/70 (38%)
 Frame = -1

Query: 721 PLCIKPPSPAXSDTSTRSSNPPIPYTNHPRLNIHFHQSPDAVLEGVRAGVKASVVIRGSI 542
           PL    P P  S        PP P    P L +     P +VL     G+K+ VV  G  
Sbjct: 182 PLAAASPPPP-SGGPPPPPPPPPPPPPPPILELAAPPPPGSVLGAALTGIKSGVVGGGGE 240

Query: 541 SVSHPLVTGH 512
           S+    + GH
Sbjct: 241 SLMDSFLLGH 250


>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = -2

Query: 651 HTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPP 490
           +TP+TP   S+   P TP           P +   PS   TPS+    K  S P
Sbjct: 277 NTPSTPSTPSMPSTPSTPSTPSTPSTPSTPSAPSTPSTPSTPSTPSTPKTPSTP 330



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = -2

Query: 651 HTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPP 490
           +TP+TP   S+   P TP           P +   PS   TPS+    K  S P
Sbjct: 827 NTPSTPSTPSMPSTPSTPSTPSTPSTPSTPSAPSTPSTPSTPSTPSTPKTPSTP 880


>SB_30182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = -2

Query: 681 HQPDHQIPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKG 502
           +QPD+Q+  F +PT  +L S  +N   P    F   L+P     A +  L+ ++LG   G
Sbjct: 91  NQPDYQLLAF-SPTGVELVSAELNNEEPSVNLFKNYLQPDRVRLADAMALSAAALGTSMG 149


>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4994

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -3

Query: 236  PFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDS 90
            P D +  +N+ +VL DNKT  L+   +  +P S   + + +P ++ + S
Sbjct: 2286 PVDAIWIENLNSVLDDNKTLTLANGDR--IPMSPQCKVVFEPHNIDNAS 2332


>SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 963

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 648 TPTTPDLTSISINPLTPY 595
           TPT PD+T +SI  L PY
Sbjct: 75  TPTRPDVTQLSITGLKPY 92


>SB_52889| Best HMM Match : Pex2_Pex12 (HMM E-Value=1)
          Length = 623

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = -2

Query: 681 HQPDHQIPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKG 502
           +QPD+Q+  F +PT  +L S  +N   P    F   L+P     A +  L+ ++LG   G
Sbjct: 424 NQPDYQLLAF-SPTGVELVSAELNNEEPSVNLFKNYLQPDRVRLADAMALSAAALGTSMG 482


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = -2

Query: 648  TPTTPDLTSISINPLTPY*KEFAPGL---KPPLSSEAPSAYLTPSSLGMXKGVSPP 490
            TPTTP  T+ +  P  P   E  P L    PP+ +  P+   TP++       +PP
Sbjct: 897  TPTTPKPTTPAPPPPLPLAPEPPPPLPPPPPPIQTTRPTVPTTPTTQASTTRPTPP 952


>SB_26014| Best HMM Match : Pex2_Pex12 (HMM E-Value=1)
          Length = 578

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = -2

Query: 681 HQPDHQIPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKG 502
           +QPD+Q+  F +PT  +L S  +N   P    F   L+P     A +  L+ ++LG   G
Sbjct: 481 NQPDYQLLAF-SPTGVELVSAELNNEEPSVNLFKNYLQPDRVRLADAMALSAAALGTSMG 539


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,084,141
Number of Sequences: 59808
Number of extensions: 489668
Number of successful extensions: 1619
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1593
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)