Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_K05
(804 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 181 2e-44
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 171 2e-41
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 151 2e-35
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 133 6e-30
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 132 8e-30
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 122 8e-27
UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep: ... 113 4e-24
UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S riboso... 85 2e-15
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 82 2e-14
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 67 6e-10
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 60 5e-08
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 58 2e-07
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 58 3e-07
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 57 5e-07
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 56 8e-07
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 51 3e-05
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 50 5e-05
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 49 1e-04
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 47 5e-04
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 45 0.002
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 45 0.002
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 44 0.003
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 44 0.006
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 42 0.018
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 39 0.17
UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1; ... 36 0.90
UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-... 36 1.6
UniRef50_UPI000051A196 Cluster: PREDICTED: similar to Toll-6 CG7... 35 2.1
UniRef50_Q9P0F5 Cluster: HSPC081; n=1; Homo sapiens|Rep: HSPC081... 35 2.1
UniRef50_A0Y0D7 Cluster: Methyl-accepting chemotaxis protein; n=... 35 2.8
UniRef50_Q5YBD3 Cluster: Plastid ferredoxin-thioredoxin reductas... 33 6.4
UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1; ... 33 8.4
UniRef50_Q6KI55 Cluster: 50S ribosomal protein L3; n=11; Bacteri... 33 8.4
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 181 bits (441), Expect = 2e-44
Identities = 85/119 (71%), Positives = 99/119 (83%)
Frame = -1
Query: 456 RKSIVLDQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPK 277
+K + QG KDGK+IKNNAST+YDLS+KSI P+GGF HYGEV NDFVM+KGC +G K
Sbjct: 282 KKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTK 341
Query: 276 KRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 100
KR++TLRKSL V TKR ALEKI+LKFIDT+SKFGHGRFQT +K AFMG LKKDRI +E
Sbjct: 342 KRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKE 400
Score = 106 bits (254), Expect = 7e-22
Identities = 52/106 (49%), Positives = 69/106 (65%)
Frame = -3
Query: 754 IQLNXGTIEDKVKWAREHLENLSLSILCLPKMK*LTALVSPRAKDTKVSLLVGTQRSYPV 575
IQ+N GT+ +K+ WARE LE + + + + + K K + P
Sbjct: 183 IQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPR 242
Query: 574 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 437
+ +GLRKVACIGAWHP+RV+F+VARAGQKGYHHRTE+NKKIY+IG
Sbjct: 243 KTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIG 288
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 171 bits (415), Expect = 2e-41
Identities = 78/118 (66%), Positives = 93/118 (78%)
Frame = -1
Query: 456 RKSIVLDQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPK 277
+K + +G H +DGK++KNNAST YD++ KSITP+GGFPHYGEVNNDFVM+KGC G K
Sbjct: 282 KKIFRIGRGPHMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTK 341
Query: 276 KRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 103
KR+ITLRKSL VH R A+E I LKFIDT+SKFGHGRFQT +K AFMG KK +E
Sbjct: 342 KRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQKKHLEKE 399
Score = 104 bits (249), Expect = 3e-21
Identities = 52/110 (47%), Positives = 68/110 (61%)
Frame = -3
Query: 754 IQLNXGTIEDKVKWAREHLENLSLSILCLPKMK*LTALVSPRAKDTKVSLLVGTQRSYPV 575
IQLN GT+ +KV WA+ LE + + + + + + K + P
Sbjct: 183 IQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPR 242
Query: 574 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNP 425
+ KGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE+NKKI+RIG R P
Sbjct: 243 KTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIG-RGP 291
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 151 bits (367), Expect = 2e-35
Identities = 69/100 (69%), Positives = 83/100 (83%)
Frame = -1
Query: 402 KNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAA 223
KNN STE+DL++K+ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR A
Sbjct: 249 KNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVA 308
Query: 222 LEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 103
EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 309 HEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 348
Score = 89.8 bits (213), Expect = 7e-17
Identities = 39/51 (76%), Positives = 44/51 (86%)
Frame = -3
Query: 589 RSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 437
+ P + KGLRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG
Sbjct: 190 KKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIG 240
Score = 44.0 bits (99), Expect = 0.005
Identities = 21/38 (55%), Positives = 23/38 (60%)
Frame = -2
Query: 674 VFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHQG 561
V A +MID I TSRWHTKKLPRKTH+G
Sbjct: 162 VIAHTQMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKG 199
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 133 bits (321), Expect = 6e-30
Identities = 64/114 (56%), Positives = 83/114 (72%)
Frame = -1
Query: 456 RKSIVLDQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPK 277
+K + QG K+GK+IKNNAST+Y KSI+P+GG H G+V NDFVM+K C +G K
Sbjct: 230 KKIYKIGQGYLIKNGKIIKNNASTDYT---KSISPLGGCIHCGKVTNDFVMLKDCLVGTK 286
Query: 276 KRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 115
KR+++L KSL + TK+ L+K+N KFIDT+SKFGHG FQ +K FMG LKKD
Sbjct: 287 KRVLSLCKSLLMRTKQQTLQKVNFKFIDTTSKFGHGCFQIVGEKKGFMGPLKKD 340
Score = 37.5 bits (83), Expect = 0.39
Identities = 32/105 (30%), Positives = 52/105 (49%)
Frame = -3
Query: 751 QLNXGTIEDKVKWAREHLENLSLSILCLPKMK*LTALVSPRAKDTKVSLLVGTQRSYPVR 572
Q+N G + K+ WA + LE + + + +++ L + + + K K + P +
Sbjct: 141 QVNRGPVA-KLDWAHKKLEQ-QVPVNHIFRVRRLFVIGTTKGKHYKGISSHWYTKKVPWK 198
Query: 571 HTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 437
+ + ACI W +VA A QKG HH T +NKKIY+IG
Sbjct: 199 THQEFHEAACI--WD----GLSVAWARQKGCHHCT-INKKIYKIG 236
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 132 bits (320), Expect = 8e-30
Identities = 61/100 (61%), Positives = 74/100 (74%)
Frame = -1
Query: 399 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 220
N A+T YDL+ K+ITPMGGF YG V ND+VM+KG GP++R+ITLR+ + T R
Sbjct: 350 NQATTAYDLTAKTITPMGGFVGYGTVRNDYVMLKGSVAGPRRRVITLRRPMAPQTSRKLT 409
Query: 219 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 100
EKI LKFIDTSSK GHGRFQT +K+ + G LKKDRIR E
Sbjct: 410 EKITLKFIDTSSKIGHGRFQTKKEKSQWYGPLKKDRIRRE 449
Score = 89.4 bits (212), Expect = 9e-17
Identities = 50/107 (46%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Frame = -3
Query: 754 IQLNXGTIEDKVKWAREHLEN-LSLSILCLPKMK*LTALVSPRAKDTKVSLLVGTQRSYP 578
IQ+N GTI K++ A+ LE + + + V+ T V G P
Sbjct: 237 IQINGGTIAQKIELAKSLLEKEVRIDSVFQQSEACDVCAVTKGHGFTGVVKRWGVA-CLP 295
Query: 577 VRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 437
+ +GLRKVACIGAWHPSRV +TVARAGQ GYHHRT +NKKIY++G
Sbjct: 296 RKTHRGLRKVACIGAWHPSRVMYTVARAGQHGYHHRTHLNKKIYQLG 342
Score = 34.7 bits (76), Expect = 2.8
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = -2
Query: 719 EMGQRTSGEPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHQG 561
E+ + + + +DSVF Q E D RW LPRKTH+G
Sbjct: 249 ELAKSLLEKEVRIDSVFQQSEACDVCAVTKGHGFTGVVKRWGVACLPRKTHRG 301
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 122 bits (295), Expect = 8e-27
Identities = 64/119 (53%), Positives = 80/119 (67%)
Frame = -1
Query: 456 RKSIVLDQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPK 277
+K + QG KDGK+IKNNA TEY LS+KSI +GGF HYGEV NDF+ +KGC + K
Sbjct: 260 KKICKIGQGYLIKDGKLIKNNAPTEYHLSDKSINLLGGFVHYGEVTNDFIRLKGCAVRTK 319
Query: 276 KRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 100
K +T+ K L V T + AL+KI+ K DT+ K GHG FQT K AF+G LKK+ EE
Sbjct: 320 KH-LTICKYLLVQTIQWALKKIDPKLNDTTYKVGHGCFQTTEGKRAFIGPLKKECTAEE 377
Score = 66.9 bits (156), Expect = 6e-10
Identities = 31/55 (56%), Positives = 41/55 (74%)
Frame = -3
Query: 601 VGTQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 437
V QR+ P R +G K+ C+GAWHP+RV+F+VA+ GQKGYHH + NKKI +IG
Sbjct: 214 VDIQRNCPERPIEGCPKL-CVGAWHPARVTFSVAQVGQKGYHHNGD-NKKICKIG 266
>UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep:
Ribosomal protein L3 - Mus musculus (Mouse)
Length = 67
Score = 113 bits (273), Expect = 4e-24
Identities = 50/67 (74%), Positives = 59/67 (88%)
Frame = -1
Query: 414 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHT 235
GK+IKNNAST+YDLS+KSI P+GGF HYGEV NDF+M+KGC +G KKR++TLRKSL V T
Sbjct: 1 GKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQT 60
Query: 234 KRAALEK 214
KR ALEK
Sbjct: 61 KRRALEK 67
>UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S ribosomal
protein L3 (L4); n=1; Macaca mulatta|Rep: PREDICTED:
similar to 60S ribosomal protein L3 (L4) - Macaca
mulatta
Length = 153
Score = 85.0 bits (201), Expect = 2e-15
Identities = 41/63 (65%), Positives = 50/63 (79%)
Frame = -1
Query: 288 MGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRI 109
+G KK+++TL KS V TK ALEKI+LKFIDT+SKFGHGRFQT +K AFMG LKKD+
Sbjct: 88 VGTKKQVLTLCKSSLVQTKWRALEKIDLKFIDTTSKFGHGRFQTIGEKKAFMGPLKKDQT 147
Query: 108 REE 100
+E
Sbjct: 148 AKE 150
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 81.8 bits (193), Expect = 2e-14
Identities = 38/78 (48%), Positives = 53/78 (67%)
Frame = -1
Query: 366 KSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTS 187
KS+ MGGF +G +NND+++IKG G KR I LRK+++ EKI LK++DTS
Sbjct: 288 KSVNCMGGFKKFGFINNDYLIIKGSMTGSSKRPILLRKNIKNKISSVITEKIILKYVDTS 347
Query: 186 SKFGHGRFQTPADKAAFM 133
SK GHGR+++ ADK + M
Sbjct: 348 SKRGHGRYESSADKFSKM 365
Score = 77.0 bits (181), Expect = 5e-13
Identities = 33/48 (68%), Positives = 40/48 (83%)
Frame = -3
Query: 580 PVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 437
P + +GLRKVACIG W PSRV++T++RAGQKGYH RT NKKIY+IG
Sbjct: 223 PRKTHRGLRKVACIGPWTPSRVAWTISRAGQKGYHKRTLFNKKIYKIG 270
Score = 38.7 bits (86), Expect = 0.17
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = -2
Query: 719 EMGQRTSGEPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHQG 561
E + + + I ++S+F ++++ID I SRW +LPRKTH+G
Sbjct: 177 EFWLKLNNKKIYINSIFHENDIIDAIGITKGHGTKGVVSRWGITRLPRKTHRG 229
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 66.9 bits (156), Expect = 6e-10
Identities = 28/52 (53%), Positives = 36/52 (69%)
Frame = -3
Query: 574 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNPQK 419
+ +KG RKV IG WHP+RV +TV AGQ G+HHRTE+NK++ IG K
Sbjct: 245 KDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGKLK 296
Score = 60.1 bits (139), Expect = 6e-08
Identities = 27/64 (42%), Positives = 40/64 (62%)
Frame = -1
Query: 372 SEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFID 193
+E ITP GGFPHYG V +DF+MI G G KRII +R ++R K+ +++ + ++
Sbjct: 301 TEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVS 360
Query: 192 TSSK 181
SK
Sbjct: 361 VESK 364
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 60.5 bits (140), Expect = 5e-08
Identities = 27/65 (41%), Positives = 41/65 (63%)
Frame = -1
Query: 369 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDT 190
E +TP GGF HYGEV N +++++G GP KR++ R +R HT + ++L ++ T
Sbjct: 296 ESDVTPAGGFLHYGEVTNPYMVLEGSLPGPAKRLLRFRDPVRPHTN---VFDVDLTYVST 352
Query: 189 SSKFG 175
SSK G
Sbjct: 353 SSKQG 357
Score = 42.7 bits (96), Expect = 0.010
Identities = 19/45 (42%), Positives = 30/45 (66%)
Frame = -3
Query: 574 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 440
+++K R++ +G + V T+ +AGQ GYH RTE+NK+I RI
Sbjct: 247 KNSKRRRQIGNMGDFGTGYVRKTIRQAGQMGYHKRTELNKRILRI 291
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 58.4 bits (135), Expect = 2e-07
Identities = 29/55 (52%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = -3
Query: 565 KGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG-PRNPQKGWQSY 404
KG+RKV IG+ P R+ TV GQ GYH RTE NK I +IG P N + GW Y
Sbjct: 218 KGVRKVGAIGSRGPGRIFPTVPMPGQMGYHRRTEYNKLIIKIGEPLNVEGGWVRY 272
Score = 42.3 bits (95), Expect = 0.014
Identities = 20/56 (35%), Positives = 35/56 (62%)
Frame = -1
Query: 348 GGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 181
GG+ YG+V +++KG GP+KR+I LR+++R K+ +E +++I S K
Sbjct: 267 GGWVRYGQVIGPTILLKGSVPGPRKRLIILREAIRPPRKQEKVE--GIEYISLSPK 320
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 58.0 bits (134), Expect = 3e-07
Identities = 26/62 (41%), Positives = 41/62 (66%)
Frame = -1
Query: 360 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 181
ITP GGF HYG + N++V++KG GP KR+I LR+++R + ++ + +I T+SK
Sbjct: 275 ITPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIVLRRAIR--PQEPLIKVPEITYISTTSK 332
Query: 180 FG 175
G
Sbjct: 333 QG 334
Score = 49.6 bits (113), Expect = 9e-05
Identities = 23/44 (52%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = -3
Query: 565 KGL-RKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 437
KG+ R V IG W P V ++V GQ GYH RTE NK+I +IG
Sbjct: 226 KGVGRHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNKRILKIG 269
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 57.2 bits (132), Expect = 5e-07
Identities = 25/64 (39%), Positives = 39/64 (60%)
Frame = -1
Query: 366 KSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTS 187
+ ITP GGF HYG + ND++M+KG GP KR++ +R ++R K + + ++ T
Sbjct: 276 EEITPAGGFLHYGLIRNDYIMLKGSIPGPVKRMVRIRPAVR--PKNMPKQAPEITYLSTQ 333
Query: 186 SKFG 175
SK G
Sbjct: 334 SKMG 337
Score = 50.0 bits (114), Expect = 7e-05
Identities = 23/57 (40%), Positives = 34/57 (59%)
Frame = -3
Query: 601 VGTQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPR 431
+ TQ+ R K R V +G W+P R+ + V + GQ GYH RTE NK+I ++G +
Sbjct: 219 IATQKRKHARTGKK-RHVGNLGPWNPHRIRWQVPQLGQTGYHQRTEYNKRILKMGDK 274
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 56.4 bits (130), Expect = 8e-07
Identities = 27/65 (41%), Positives = 39/65 (60%)
Frame = -1
Query: 369 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDT 190
E ITP GGF HYGEV N +++I+G GP KR+I R + R R +++ ++ T
Sbjct: 276 ESQITPAGGFLHYGEVKNHYMIIQGSLPGPAKRLIRFRDAAR---PRREQPPVDITYVST 332
Query: 189 SSKFG 175
+SK G
Sbjct: 333 ASKQG 337
Score = 41.9 bits (94), Expect = 0.018
Identities = 19/45 (42%), Positives = 29/45 (64%)
Frame = -3
Query: 574 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 440
+++K R++ +G + V T+ +AGQ GYH RTE NK+I RI
Sbjct: 227 KNSKRRRQIGNMGDFGTGYVRKTIRQAGQTGYHQRTEYNKRILRI 271
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 51.2 bits (117), Expect = 3e-05
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Frame = -3
Query: 556 RKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRN---PQKGWQSY 404
R++ +G W+PSRV TV + GQ GYH RTE+NK++ I + P G+ +Y
Sbjct: 232 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDGDEPTPDGGFPNY 285
Score = 48.0 bits (109), Expect = 3e-04
Identities = 21/61 (34%), Positives = 40/61 (65%)
Frame = -1
Query: 357 TPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKF 178
TP GGFP+YGEV+ + ++KG GP++R++ R ++R + + L+ ++++ T+S
Sbjct: 277 TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRPN-ESPRLDP-EVRYVSTASNQ 334
Query: 177 G 175
G
Sbjct: 335 G 335
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 50.4 bits (115), Expect = 5e-05
Identities = 26/46 (56%), Positives = 30/46 (65%)
Frame = -3
Query: 574 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 437
R KG R + IG PSRV +TV AGQ GYH RTE NK+I +IG
Sbjct: 231 RKQKG-RHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHNKRILKIG 275
Score = 50.0 bits (114), Expect = 7e-05
Identities = 20/41 (48%), Positives = 29/41 (70%)
Frame = -1
Query: 366 KSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 244
+ +TP GGF +YG V D++MI G GPKKR+I +R ++R
Sbjct: 279 EEVTPRGGFVNYGVVRGDYIMIHGTVPGPKKRLIRVRPAVR 319
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 49.2 bits (112), Expect = 1e-04
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = -1
Query: 411 KVIKNNASTEYDLSEKS--ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 238
+ I N +Y E + I GGF HYG V ND+V++ G GP KR+I +R R
Sbjct: 252 RTISNVRVLKYSKGEDADTINVRGGFLHYGLVKNDYVLLFGSVPGPAKRLIKMRDPAR-- 309
Query: 237 TKRAALEKINLKFIDTSSKFG 175
K ++ + L +I SK G
Sbjct: 310 QKVPDIDNVKLDYISLESKQG 330
Score = 42.3 bits (95), Expect = 0.014
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = -3
Query: 580 PVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYR 443
P ++ K R + +G WHP V TV +AGQ GY RT N ++ +
Sbjct: 216 PRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGYQQRTISNVRVLK 261
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 47.2 bits (107), Expect = 5e-04
Identities = 19/43 (44%), Positives = 29/43 (67%)
Frame = -1
Query: 372 SEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 244
S K I P GG+PHYG V + F++++G G KR++ LR ++R
Sbjct: 270 SLKEINPPGGWPHYGLVRSQFIIVEGSVPGAVKRLVRLRHAIR 312
Score = 44.0 bits (99), Expect = 0.005
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Frame = -3
Query: 574 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPR------NPQKGW 413
+H KG ++ +G P+ + F GQ G+H RTE NK+I ++G NP GW
Sbjct: 222 KHRKGHSRIGSVGPQKPA-IMFYTPFPGQLGFHQRTEYNKRILKVGDAESLKEINPPGGW 280
Query: 412 QSY 404
Y
Sbjct: 281 PHY 283
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 45.2 bits (102), Expect = 0.002
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = -3
Query: 565 KGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 437
K +R++ +G P V +TV RAGQ G+H R E NK+I +G
Sbjct: 224 KTVRELGSLGPISPQNVMYTVPRAGQMGFHQRIEYNKRIMAVG 266
Score = 45.2 bits (102), Expect = 0.002
Identities = 18/53 (33%), Positives = 31/53 (58%)
Frame = -1
Query: 369 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKI 211
+ +I P GG+ H+G V D++++KG G +R++ LR +R KR + I
Sbjct: 271 DDAINPSGGYKHFGMVKGDYIVLKGSVPGTYRRLVKLRAQIRNAPKRTSKPNI 323
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 45.2 bits (102), Expect = 0.002
Identities = 20/41 (48%), Positives = 27/41 (65%)
Frame = -1
Query: 366 KSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 244
K I P GGF YG V N +V+++G +G KKR I LR+ +R
Sbjct: 290 KEINPAGGFVRYGIVRNTYVLLEGSILGSKKRPIFLREPVR 330
Score = 38.7 bits (86), Expect = 0.17
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Frame = -3
Query: 574 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG--PR--NPQKGWQS 407
+H KG RK+ G S+T + GQ G+H RTE NK+I +IG P+ NP G+
Sbjct: 243 KHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGDEPKEINPAGGFVR 300
Query: 406 Y 404
Y
Sbjct: 301 Y 301
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 44.4 bits (100), Expect = 0.003
Identities = 19/45 (42%), Positives = 27/45 (60%)
Frame = -1
Query: 378 DLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 244
D + I P GGF H+G V DF+++KG G +R+I LR +R
Sbjct: 271 DDDKLKINPDGGFKHFGLVKGDFIVLKGSVPGAYRRLIKLRSQIR 315
Score = 42.7 bits (96), Expect = 0.010
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = -3
Query: 565 KGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNPQK 419
K +R+V +G P V +TV RAGQ G+H R E +K+I +G + K
Sbjct: 226 KTVREVGSLGPISPQSVMYTVPRAGQFGFHQRVEYDKRIMIMGNTDDDK 274
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 43.6 bits (98), Expect = 0.006
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = -1
Query: 360 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 244
+TP GGF YG V ++M+ G +GP+KR++ LR +R
Sbjct: 334 VTPKGGFLGYGIVYGPYIMLHGSIIGPRKRLLVLRHPIR 372
Score = 36.3 bits (80), Expect = 0.90
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = -3
Query: 574 RHTKGLRKVACIGAWHPSRVSFT-VARAGQKGYHHRTEMNKKIYRIG 437
+H KG RK IG+ P + + + GQ G+H RTE NK+I +IG
Sbjct: 285 KHRKGSRK---IGSRSPGFGTMSETPQPGQMGFHRRTEYNKRIIKIG 328
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 41.9 bits (94), Expect = 0.018
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = -1
Query: 360 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHT--KRAALEKINLKFIDTS 187
+TP GGF YG V + FVM+ G G KR I +R ++R + + K + +I +
Sbjct: 280 VTPAGGFLRYGVVRSTFVMLSGSIPGTPKRPIVMRWAIRPPEWYLKLGVRKPEITYISLA 339
Query: 186 SKFG 175
SK G
Sbjct: 340 SKQG 343
Score = 36.3 bits (80), Expect = 0.90
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -3
Query: 574 RHTKGLRKVACIGAWHPSRVSF-TVARAGQKGYHHRTEMNKKIYRI 440
+H KG R+ IGA R +F +AGQ G+H RTE NK+I I
Sbjct: 231 KHRKGSRR---IGARSHGRSTFWETPQAGQTGFHRRTEYNKRILMI 273
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 38.7 bits (86), Expect = 0.17
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = -3
Query: 574 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPR----NPQKGWQS 407
+H KG R+V +W S+ V + GQ GYH RT+ NK++ I N + GW
Sbjct: 248 KHRKGSRRVGA-RSWGKGTSSY-VPQPGQMGYHRRTDYNKRVLMISDDPSKINVEGGWLH 305
Query: 406 Y 404
Y
Sbjct: 306 Y 306
Score = 37.5 bits (83), Expect = 0.39
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = -1
Query: 348 GGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 244
GG+ HYG V + +V++KG GP KR I +R +R
Sbjct: 301 GGWLHYGLVKSKYVVLKGSVFGPPKRPIIMRLPVR 335
>UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 173
Score = 36.3 bits (80), Expect = 0.90
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +3
Query: 588 LCVPTRSDTFVSFALGDTNAVNHFILGKHRIDRDRF 695
L P+ DT + GD+N +NHFIL ++R++R+ F
Sbjct: 39 LGTPSVGDTLETVTFGDSNDINHFILFENRVNRNFF 74
>UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-12
- Homo sapiens (Human)
Length = 103
Score = 35.5 bits (78), Expect = 1.6
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = -2
Query: 248 CVCIQRGLH*KRSTSNSLTPRPSSVMVDSRRRLTRLHSWVH 126
C C + G +R T +SLTP PS M SR R HSW H
Sbjct: 63 CWCRRSGGLWRRLTLSSLTPPPSLAMAASRPWRRRKHSWDH 103
>UniRef50_UPI000051A196 Cluster: PREDICTED: similar to Toll-6
CG7250-PA; n=1; Apis mellifera|Rep: PREDICTED: similar
to Toll-6 CG7250-PA - Apis mellifera
Length = 1218
Score = 35.1 bits (77), Expect = 2.1
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 410 LPSFLWIPWSNTIDFLVHFSTVM-ITFLTSTSYSERHPRRMPSSNAGNFPKTLGV 571
+P L+ P SN + V ++ + IT L +ERHPRR S FP +L V
Sbjct: 179 IPEHLFCPLSNLVTLNVSWNMLKDITELGFRDIAERHPRRQQESTTSPFPCSLDV 233
>UniRef50_Q9P0F5 Cluster: HSPC081; n=1; Homo sapiens|Rep: HSPC081 -
Homo sapiens (Human)
Length = 92
Score = 35.1 bits (77), Expect = 2.1
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 661 SWANTESTGIGSPDVLWPISLCP 729
SW N+ S G+G+P +LWP LCP
Sbjct: 26 SWPNSPSLGVGAPIILWP-GLCP 47
>UniRef50_A0Y0D7 Cluster: Methyl-accepting chemotaxis protein; n=1;
Alteromonadales bacterium TW-7|Rep: Methyl-accepting
chemotaxis protein - Alteromonadales bacterium TW-7
Length = 676
Score = 34.7 bits (76), Expect = 2.8
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Frame = -1
Query: 459 TRKSIVLDQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGP 280
T+ + V D H++D + + +N + E+ TP+G + + F ++ GP
Sbjct: 204 TQTTSVSDLNDHQQDTQFLLDNIQPNFVYLEQQATPLGDNLNASQFTEQFNNLRSRLNGP 263
Query: 279 KKRIITLRKSLR-VHTKRAALEKINLKFIDTSS------KFGHGRFQTPADKA 142
K+L+ + + E+ +FIDT S K RFQT + A
Sbjct: 264 DGIYAQQNKALKNTQMAQQSFERFQQEFIDTESQLLQLNKLADERFQTLQNSA 316
>UniRef50_Q5YBD3 Cluster: Plastid ferredoxin-thioredoxin reductase
variable chain subunit A; n=1; Helicosporidium sp. ex
Simulium jonesii|Rep: Plastid ferredoxin-thioredoxin
reductase variable chain subunit A - Helicosporidium sp.
subsp. Simulium jonesii (Green alga)
Length = 114
Score = 33.5 bits (73), Expect = 6.4
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = -3
Query: 640 VSPRAKDTKVSL-LVGTQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTE 464
V PRAK S T+RS P+R +R + I WH + + G +G +
Sbjct: 12 VRPRAKSVTASAGQSATERSPPLREGATVRVTSPITVWHVPKFRKGMNVQGLQG---KIM 68
Query: 463 MNKKIYRIGPRNPQKGWQ 410
N ++R P +P K W+
Sbjct: 69 QNVSVFRGVPLSPSKPWK 86
>UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1;
Plasmodium falciparum 3D7|Rep: Putative uncharacterized
protein - Plasmodium falciparum (isolate 3D7)
Length = 1482
Score = 33.1 bits (72), Expect = 8.4
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +1
Query: 259 KSNDTLFRSHAATLDHHKVVVYFTIMGETSHRCNGFLRQIILSRCIVFNNFAILFVDSL 435
+ N+ + TL H ++ YF + +SH +II + +++NNFA +F+ L
Sbjct: 450 QKNNIKYNIKWLTLFFHSLIQYFVYLNNSSHILINHKDKIIFIKHLLYNNFAQMFLKYL 508
>UniRef50_Q6KI55 Cluster: 50S ribosomal protein L3; n=11;
Bacteria|Rep: 50S ribosomal protein L3 - Mycoplasma
mobile
Length = 297
Score = 33.1 bits (72), Expect = 8.4
Identities = 11/42 (26%), Positives = 26/42 (61%)
Frame = -1
Query: 327 EVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLK 202
++ N+ +++KG GPK + ++ +++ R A+E +N+K
Sbjct: 181 DIKNNILLVKGSVPGPKNCFLIIKSAIKNLPSREAIELVNIK 222
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 809,483,915
Number of Sequences: 1657284
Number of extensions: 16904535
Number of successful extensions: 40049
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 38752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40037
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69143070360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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