Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_K05
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   140   3e-34
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   140   3e-34
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    29   0.77 
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    27   3.1  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   4.1  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    27   4.1  
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.5  
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   7.2  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  140 bits (338), Expect = 3e-34
 Identities = 63/94 (67%), Positives = 75/94 (79%)
 Frame = -1

Query: 396 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALE 217
           NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  HT R ALE
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALE 352

Query: 216 KINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 115
            ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 353 PVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score =  101 bits (241), Expect = 2e-22
 Identities = 54/122 (44%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
 Frame = -3

Query: 781 ATKEGSHYGIQLNXGTIEDKVKWAREHLENLSLSILCLPKMK*LTALVSPRAKDTK-VSL 605
           A K+     IQ+N G++ DKV+WAREH E          + + +  +   R K  +  + 
Sbjct: 172 AQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTA 231

Query: 604 LVGTQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNP 425
             GT+R  P +  +GLRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG  + 
Sbjct: 232 RWGTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDD 290

Query: 424 QK 419
            K
Sbjct: 291 AK 292


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  140 bits (338), Expect = 3e-34
 Identities = 63/94 (67%), Positives = 75/94 (79%)
 Frame = -1

Query: 396 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALE 217
           NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  HT R ALE
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALE 352

Query: 216 KINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 115
            ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 353 PVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score =  101 bits (241), Expect = 2e-22
 Identities = 54/122 (44%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
 Frame = -3

Query: 781 ATKEGSHYGIQLNXGTIEDKVKWAREHLENLSLSILCLPKMK*LTALVSPRAKDTK-VSL 605
           A K+     IQ+N G++ DKV+WAREH E          + + +  +   R K  +  + 
Sbjct: 172 AQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTA 231

Query: 604 LVGTQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNP 425
             GT+R  P +  +GLRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG  + 
Sbjct: 232 RWGTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDD 290

Query: 424 QK 419
            K
Sbjct: 291 AK 292


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 733 IEDKVKWAREHLENLSLSILCLP 665
           IE  + WA+E+++    S+LCLP
Sbjct: 336 IEQTITWAKEYIKKAKDSLLCLP 358


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -2

Query: 500 SCWSERLSSPY*NEQENLSYWTKESTKRMAKLLKTMHLLSMICLRNPLH 354
           S +   L S Y   +  L  W++E  KR+ KLL  M L  + C +  +H
Sbjct: 322 SLYDSMLHSAYVGSR--LHIWSEEGRKRLHKLLAKMGLSLVECKQTYIH 368


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 136 HGYTQEGSYSRRSCGYHNPS 77
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 672 HRIDRDRFS-RCSLAHFTLSSMVPXLSWIP*CEPSFVAV 785
           H ID D  +   SL+H T SS++  L+W P  +   +AV
Sbjct: 426 HNIDSDEDAVNESLSHSTKSSIIQSLAWGPLSDSPVLAV 464


>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 476 SPY*NEQENLSYWTKESTKRMAKLLKTMHLLSMICLRNPLHRWEVSP 336
           SP+    + L+Y   E  +   K +     +  + LRNPL R++VSP
Sbjct: 63  SPFCCFTDTLAYLRCEPYRGYRKCIYRKVKMPNLILRNPLVRYDVSP 109


>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 122

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 383 SVDALFLITLPSFLWIPW 436
           +VDA+F I+  +FLW  W
Sbjct: 11  TVDAIFAISSSTFLWSTW 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,349,672
Number of Sequences: 5004
Number of extensions: 71296
Number of successful extensions: 188
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)