Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_K05
(804 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 141 7e-34
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 134 1e-31
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 29 3.3
07_01_0761 + 5849466-5850677 29 5.7
06_03_0915 - 25929433-25930893 29 5.7
12_01_0582 - 4752576-4752786,4752955-4753037,4753324-4753530,475... 28 7.6
03_05_0901 + 28635672-28636094,28637623-28637802,28637903-286381... 28 10.0
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 141 bits (341), Expect = 7e-34
Identities = 63/91 (69%), Positives = 73/91 (80%)
Frame = -1
Query: 393 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEK 214
A TE+D +EK ITPMGGFPHYG V D++MIKGCC+GPKKR++TLR+SL T R ALE+
Sbjct: 298 ACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEE 357
Query: 213 INLKFIDTSSKFGHGRFQTPADKAAFMGTLK 121
I LKFIDTSSKFGHGRFQT +K F G LK
Sbjct: 358 IKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
Score = 98.3 bits (234), Expect = 6e-21
Identities = 50/106 (47%), Positives = 65/106 (61%)
Frame = -3
Query: 754 IQLNXGTIEDKVKWAREHLENLSLSILCLPKMK*LTALVSPRAKDTKVSLLVGTQRSYPV 575
IQ+N GTI DKV + + E K + + + + K + + P
Sbjct: 184 IQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR 243
Query: 574 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 437
+ +GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG
Sbjct: 244 KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG 289
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 134 bits (323), Expect = 1e-31
Identities = 59/83 (71%), Positives = 69/83 (83%)
Frame = -1
Query: 393 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEK 214
A TE+D +EK ITPMGGFPHYG V D++MIKGCC+GPKKR++TLR+SL T R ALE+
Sbjct: 298 ACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEE 357
Query: 213 INLKFIDTSSKFGHGRFQTPADK 145
I LKFIDTSSKFGHGRFQT +K
Sbjct: 358 IKLKFIDTSSKFGHGRFQTTDEK 380
Score = 98.3 bits (234), Expect = 6e-21
Identities = 50/106 (47%), Positives = 65/106 (61%)
Frame = -3
Query: 754 IQLNXGTIEDKVKWAREHLENLSLSILCLPKMK*LTALVSPRAKDTKVSLLVGTQRSYPV 575
IQ+N GTI DKV + + E K + + + + K + + P
Sbjct: 184 IQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR 243
Query: 574 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 437
+ +GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG
Sbjct: 244 KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG 289
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 29.5 bits (63), Expect = 3.3
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -1
Query: 378 DLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 283
D + + +P+GG P YG ++ D + C +G
Sbjct: 1371 DPTSAAASPIGGIPRYGRLSGDVYVCNQCTIG 1402
>07_01_0761 + 5849466-5850677
Length = 403
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = -3
Query: 613 VSLLVGTQRSYPVRHTKGLRKVACI--GAWHPSRVSFTVARAGQKGYHHR 470
V+LLVG R V V+ + G HP SFT+ RA H+
Sbjct: 129 VALLVGNDRRLRVLDAAASAAVSLVPDGEHHPINCSFTLGRAASSSGEHK 178
>06_03_0915 - 25929433-25930893
Length = 486
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 337 GETSHRCNGFLRQIILSRCIVFNNFAILFVDSLVQYDRFSCSFQY 471
GE H+ G I+ C++ NN +L V ++ D S S ++
Sbjct: 138 GEVVHKALGRPASIVAQMCVIINNAGVLIVYLIIIGDVMSGSLKH 182
>12_01_0582 -
4752576-4752786,4752955-4753037,4753324-4753530,
4755128-4755207,4756853-4756998,4757088-4757719
Length = 452
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +2
Query: 350 IGVMDFSDRSYSVDALFLITLPSFLWIPWSNTIDFLVHFSTVMI 481
+ +DF + ++ +L LPS W W + + + VH ++ I
Sbjct: 392 LSAIDFLKHAADLNTRWLKRLPSNFWATWVHPLTYKVHVKSLWI 435
>03_05_0901 +
28635672-28636094,28637623-28637802,28637903-28638172,
28638506-28638757,28639205-28639453,28639533-28639606,
28639798-28639915,28640421-28640555,28640813-28640965
Length = 617
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 502 ARAGQKGYHHRTEMNKKIYRIGPRNPQ 422
+RA GY + +E N +IYR+ R+P+
Sbjct: 590 SRADNLGYEYMSEQNNEIYRLLLRDPK 616
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,285,614
Number of Sequences: 37544
Number of extensions: 482959
Number of successful extensions: 1168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -