Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_K05
         (804 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)         140   2e-33
SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)               103   2e-22
SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)               62   4e-10
SB_13763| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)                   29   3.3  
SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.8  
SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08)                   28   7.7  

>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score =  140 bits (338), Expect = 2e-33
 Identities = 62/82 (75%), Positives = 70/82 (85%)
 Frame = -1

Query: 348 GGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHG 169
           GGFPHYG+VN DF+M+KGC +GPKKR++TLRKSL VHT R A EKI LKFIDTSSKFGHG
Sbjct: 215 GGFPHYGQVNEDFLMVKGCVVGPKKRVLTLRKSLLVHTSRDAAEKITLKFIDTSSKFGHG 274

Query: 168 RFQTPADKAAFMGTLKKDRIRE 103
           RFQ PA+K AFMG LK DR +E
Sbjct: 275 RFQHPAEKRAFMGMLKSDREKE 296


>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
          Length = 338

 Score =  103 bits (246), Expect = 2e-22
 Identities = 56/108 (51%), Positives = 71/108 (65%), Gaps = 2/108 (1%)
 Frame = -3

Query: 754 IQLNXGT-IEDKVKWAREHLENLSLSILCLPKMK*LTALVSPRAKDTK-VSLLVGTQRSY 581
           IQ+N G  + +KV W RE LEN +         + +  +   +    K V+   GT++  
Sbjct: 182 IQVNGGKDVAEKVDWCRERLENPAPVRKVFSPDEMIDVIGVTKGHGFKGVTYRWGTKK-L 240

Query: 580 PVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 437
           P +  KGLRKVACIGAWHP+RVSF+VARAGQ GYHHRTE+NKKIYRIG
Sbjct: 241 PRKTHKGLRKVACIGAWHPARVSFSVARAGQAGYHHRTELNKKIYRIG 288



 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 27/36 (75%), Positives = 32/36 (88%)
 Frame = -1

Query: 456 RKSIVLDQGIHKKDGKVIKNNASTEYDLSEKSITPM 349
           +K   + QGIHKKDGKVIKNNASTEYDL++KSI+PM
Sbjct: 282 KKIYRIGQGIHKKDGKVIKNNASTEYDLTDKSISPM 317


>SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 28/36 (77%), Positives = 32/36 (88%)
 Frame = -1

Query: 456 RKSIVLDQGIHKKDGKVIKNNASTEYDLSEKSITPM 349
           +K   + QGIHKKDGKVIKNNASTEYDL++KSITPM
Sbjct: 11  KKIYRIGQGIHKKDGKVIKNNASTEYDLTDKSITPM 46



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 15/16 (93%), Positives = 16/16 (100%)
 Frame = -3

Query: 484 GYHHRTEMNKKIYRIG 437
           GYHHRTE+NKKIYRIG
Sbjct: 2   GYHHRTELNKKIYRIG 17


>SB_13763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +2

Query: 467 STVMITFLTSTSYSERHPRRMPSSNAGNFPKTLGVSYGVASLCANEK*HLCILCPW 634
           S   I+F  +T Y +RH RR  S N  +F   +    G ++L  N K      CP+
Sbjct: 96  SRTPISFPNTTQYRDRHARRSRSQNGVSFLINIATLVGDSALGTNIKPAPYSSCPF 151


>SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 423 KKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIK 298
           KK   V +N+  T  D    +   + GFPHY  + +D + IK
Sbjct: 44  KKCWTVTQNDVPTPLDCGLSAWRILSGFPHYKLIEDDHIEIK 85


>SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)
          Length = 458

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 34  NVYFHGLHLRLRSSRWGCGSRSFFANTILLE 126
           N+Y HG+ L LR   +GCGS       +L++
Sbjct: 368 NIYSHGVRLFLRYLGYGCGSDGALPYCVLMD 398


>SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -1

Query: 279 KKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMG 130
           K R++  +K  ++H+  +   K  ++F+   SKF H    T A   A  G
Sbjct: 317 KDRLLEWKKERQIHSFSSTTLKARIRFVAAMSKFAHTTEDTTAWDEATKG 366


>SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08)
          Length = 545

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -3

Query: 166 IPDAG*QGCIHGYTQEGSYSRRSCGYHNPSGCCAALSVVREN 41
           I D G   CIH +T +G Y    C + +  G        REN
Sbjct: 410 ISDDG-ANCIHVFTLDGQYVSNECSWESHEGYTHIAVTAREN 450


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,835,781
Number of Sequences: 59808
Number of extensions: 569276
Number of successful extensions: 1342
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)