Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_K05
(804 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi... 135 4e-32
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi... 135 4e-32
At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi... 131 5e-31
At5g44770.1 68418.m05487 DC1 domain-containing protein contains ... 29 3.6
At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21) ... 29 4.8
At5g11390.1 68418.m01329 expressed protein 28 6.3
At1g67420.1 68414.m07674 24 kDa vacuolar protein, putative simil... 28 6.3
At5g22400.1 68418.m02613 rac GTPase activating protein, putative... 28 8.3
At4g36150.1 68417.m05145 disease resistance protein (TIR-NBS-LRR... 28 8.3
>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 135 bits (326), Expect = 4e-32
Identities = 59/94 (62%), Positives = 73/94 (77%)
Frame = -1
Query: 399 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 220
+ A TEYD +EK +TPMGGFPHYG V +D++MIKGCC+GPKKR++TLR+SL T R AL
Sbjct: 296 HTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLAL 355
Query: 219 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 118
E+I LKFIDT+S FGHGRFQT +K F + K
Sbjct: 356 EEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVTK 389
Score = 96.7 bits (230), Expect = 2e-20
Identities = 50/106 (47%), Positives = 64/106 (60%)
Frame = -3
Query: 754 IQLNXGTIEDKVKWAREHLENLSLSILCLPKMK*LTALVSPRAKDTKVSLLVGTQRSYPV 575
IQ+N GTI KV +A E K + + + + K + + P
Sbjct: 184 IQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR 243
Query: 574 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 437
+ +GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTE+NKKIYR+G
Sbjct: 244 KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLG 289
>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 135 bits (326), Expect = 4e-32
Identities = 59/94 (62%), Positives = 73/94 (77%)
Frame = -1
Query: 399 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 220
+ A TEYD +EK +TPMGGFPHYG V +D++MIKGCC+GPKKR++TLR+SL T R AL
Sbjct: 296 HTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLAL 355
Query: 219 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 118
E+I LKFIDT+S FGHGRFQT +K F + K
Sbjct: 356 EEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVTK 389
Score = 96.7 bits (230), Expect = 2e-20
Identities = 50/106 (47%), Positives = 64/106 (60%)
Frame = -3
Query: 754 IQLNXGTIEDKVKWAREHLENLSLSILCLPKMK*LTALVSPRAKDTKVSLLVGTQRSYPV 575
IQ+N GTI KV +A E K + + + + K + + P
Sbjct: 184 IQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR 243
Query: 574 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 437
+ +GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTE+NKKIYR+G
Sbjct: 244 KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLG 289
>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
to ribosomal protein GI:806279 from [Arabidopsis
thaliana]
Length = 390
Score = 131 bits (317), Expect = 5e-31
Identities = 59/94 (62%), Positives = 74/94 (78%), Gaps = 1/94 (1%)
Frame = -1
Query: 399 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 220
++A TEYD +EK ITPMGGFPHYG V D++MIKGCC+GPKKR++TLR++L T R A+
Sbjct: 296 HSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQTSRLAM 355
Query: 219 EKINLKFIDTSSKFGHGRFQTPADKAAFMG-TLK 121
E+I LKFID +S GHGRFQT +KA F G T+K
Sbjct: 356 EEIKLKFIDAASNGGHGRFQTSQEKAKFYGRTIK 389
Score = 94.3 bits (224), Expect = 8e-20
Identities = 49/106 (46%), Positives = 63/106 (59%)
Frame = -3
Query: 754 IQLNXGTIEDKVKWAREHLENLSLSILCLPKMK*LTALVSPRAKDTKVSLLVGTQRSYPV 575
IQ+N G I KV +A E K + + + + K + + P
Sbjct: 184 IQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR 243
Query: 574 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 437
+ +GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+YR+G
Sbjct: 244 KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRVG 289
>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 541
Score = 29.1 bits (62), Expect = 3.6
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Frame = -1
Query: 360 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRK---SLRVHTKRAALEKINLKFIDT 190
I P+ P Y V DF + KGC P+K+ L SLR H ++K
Sbjct: 286 ILPINDDPCYKCVECDFCLHKGCASLPRKKAHFLHNHKISLRAHKDDVYVDKCG-----A 340
Query: 189 SSKFGHGRFQTPADKAAFMGTLKKD 115
+ +G DK++ G +K D
Sbjct: 341 CKTYSNGFKYECHDKSSCRGNIKYD 365
>At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21)
identical to ubiquitin-specific protease 21 GI:11993482
[Arabidopsis thaliana]
Length = 732
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 658 SSWANTESTGIGSPDVLWPISLC 726
SS A +S G+ PDV WP S C
Sbjct: 508 SSKACNDSVGVSIPDVKWPDSCC 530
>At5g11390.1 68418.m01329 expressed protein
Length = 703
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 639 CHQGQRIQRCHFSLAHKEATP*DTPRVLGKLPALELGIL 523
CHQG R+Q SL + E + +G + L++G L
Sbjct: 639 CHQGSRLQATFISLTNPEEEETGSKSDIGSVRRLDVGAL 677
>At1g67420.1 68414.m07674 24 kDa vacuolar protein, putative similar
to 24 kDa vacuolar protein VP24 [Ipomoea batatas]
gi|5821406|dbj|BAA83809
Length = 873
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Frame = +2
Query: 425 WIPWSNTIDFLVHFSTVMITFLTS-TSYSERHPRRMP-----SSNAGNFPKTLGVSYGVA 586
W+ S+ + FL+HF+ VM+ + YS+ P+R+ S GN + G SY +A
Sbjct: 617 WLAKSSILKFLLHFTVVMLAVSSQFFPYSKDAPKRVVLQHTFISTGGN--EITGSSYDLA 674
Query: 587 SLCAN 601
+ +N
Sbjct: 675 VIDSN 679
>At5g22400.1 68418.m02613 rac GTPase activating protein, putative
similar to rac GTPase activating protein 1 [Lotus
japonicus] GI:3695059; contains Pfam profile PF00620:
RhoGAP domain
Length = 466
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -2
Query: 212 STSNSLTPRPSSVMVDSRRRLTRLHSWVHSRR 117
S+S+S +P PSS+ SR T L S H+RR
Sbjct: 17 SSSSSSSPSPSSLSYASRSNATLLISSDHNRR 48
>At4g36150.1 68417.m05145 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1179
Score = 27.9 bits (59), Expect = 8.3
Identities = 23/67 (34%), Positives = 34/67 (50%)
Frame = -1
Query: 567 PRVLGKLPALELGILLGCRSL*LVLVRKVIITVLK*TRKSIVLDQGIHKKDGKVIKNNAS 388
P LGKL AL+ +L GC L V I +K + ++LD K+ K+++ N+S
Sbjct: 782 PEFLGKLKALQELVLSGCSKL---KTFSVPIETMK-CLQILLLDGTALKEMPKLLRFNSS 837
Query: 387 TEYDLSE 367
DL E
Sbjct: 838 RVEDLPE 844
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,761,906
Number of Sequences: 28952
Number of extensions: 386085
Number of successful extensions: 963
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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