Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_K04
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.1  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    26   5.5  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    26   7.2  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    25   9.5  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    25   9.5  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    25   9.5  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +1

Query: 259  TRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPADGSFAPPXXWPSA 420
            + ++ S   EPP     +  +S P S   A+ L      P   S APP   PSA
Sbjct: 976  SNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSA 1029


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 24/112 (21%), Positives = 47/112 (41%)
 Frame = -1

Query: 395 AKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFG 216
           A+  +A     A +AEA   E+ K+++  EP+++  +K+       +      R      
Sbjct: 92  AEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKKIAIIDSTNFRDSRVRVNGWVH 151

Query: 215 SRRSMLSVFFLTRASRLRRSGYNSVRCRGSE*SVDDFRSWRGVVLGRAASCC 60
             R+   + F+     + R G   ++C  S   V D  S+  + LG  ++ C
Sbjct: 152 RMRTQKGIIFI-----ILRDGTGFLQCVLSG-KVYDRASYDFINLGPESTVC 197


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +1

Query: 67  DAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSR 246
           D  +PS  P    +SS+  S  RH  +   +L S     +   D   LRD +  + RVS+
Sbjct: 119 DNLIPSPLPESASRSSSQSSHQRHSRDGRGELGSEHGERRSAMDG--LRDRHIRKVRVSQ 176


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 31/133 (23%), Positives = 49/133 (36%), Gaps = 1/133 (0%)
 Frame = -1

Query: 470 SNTAQYERNRSFGHXVHALGQXXGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESG 291
           S++   +R R   +    L        L S G    +S   +++   GK+   V P  + 
Sbjct: 270 SSSTSAKRRRPDHNHTSTLDASSSNTSLASTGPMTVSS---STVERKGKEASEVNPNSTS 326

Query: 290 GSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRSGYNSVRC-RGSE*SV 114
                DF + +S S+    ++S  G  R            R R +G NS  C    +  V
Sbjct: 327 SVTFSDFAAAISRSRCSRCKKSKKGCDRQ-------RPCGRCRDAGLNSEDCISDDDMPV 379

Query: 113 DDFRSWRGVVLGR 75
            + R  RG   GR
Sbjct: 380 SNARKPRGRGRGR 392


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 20/83 (24%), Positives = 33/83 (39%)
 Frame = -1

Query: 452 ERNRSFGHXVHALGQXXGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCD 273
           E N  F   V    Q  G  +    G  L+++  + + +         +PRE    ++  
Sbjct: 15  EPNSHFRRTVEEKSQLSGTNEESLGGHTLSSNAFKNNSSSISPSSSAKDPREQ---RKRT 71

Query: 272 FTSRVSHSKRETRRRSPFGSRRS 204
           F    +HS R  +   PF SR+S
Sbjct: 72  FPLNDTHSSRARQHERPFRSRKS 94


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 116 VDDFRSWRGVVLGRAASCCDLLRLS 42
           VD FR W  +      SC DLL+LS
Sbjct: 72  VDGFRLWITMEYCDGGSCLDLLKLS 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,831,349
Number of Sequences: 5004
Number of extensions: 53375
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)