Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_K02
(798 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 188 2e-46
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 181 2e-44
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 144 3e-33
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 134 2e-30
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 130 3e-29
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 98 3e-19
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 96 8e-19
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 95 2e-18
UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep: ... 77 7e-13
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 64 3e-09
UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S riboso... 62 1e-08
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 62 1e-08
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 62 2e-08
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 61 4e-08
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 60 6e-08
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 59 1e-07
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 55 2e-06
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 54 3e-06
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 54 4e-06
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 53 7e-06
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 53 1e-05
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 47 6e-04
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 46 0.001
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 39 0.17
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 38 0.29
UniRef50_Q7Q3S5 Cluster: ENSANGP00000012392; n=2; Culicidae|Rep:... 36 1.6
UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-... 36 1.6
UniRef50_Q2BFU2 Cluster: RTX toxins and related Ca2+-binding pro... 35 2.7
UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1; ... 33 6.3
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 188 bits (457), Expect = 2e-46
Identities = 90/169 (53%), Positives = 115/169 (68%), Gaps = 1/169 (0%)
Frame = -2
Query: 773 RQKXAHIMESNLXGYHXGQS-EMGQRTSGEPIPVDSVLPKMK*LTALVSPRAKDTKVSLL 597
RQK AHIME L G + Q + +PV SV + + + + + + K
Sbjct: 174 RQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTS 233
Query: 596 VGTQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHK 417
+ P + KGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE+NKKI+RIG+G H
Sbjct: 234 RWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHM 293
Query: 416 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 270
+DGK++KNNAST YD++ KSITP+GGFPHYGEVNNDFVM +G + GT K
Sbjct: 294 EDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKK 342
Score = 54.0 bits (124), Expect = 4e-06
Identities = 25/37 (67%), Positives = 28/37 (75%)
Frame = -1
Query: 210 INLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 100
I LKFIDT+SKFGHGRFQT +K AFMG KK +E
Sbjct: 363 IELKFIDTTSKFGHGRFQTAQEKRAFMGPQKKHLEKE 399
Score = 40.7 bits (91), Expect = 0.041
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = -3
Query: 295 KGCCMGPKKRIITLRKSLRVHTKRAALKD 209
KGC G KKR+ITLRKSL VH R A+++
Sbjct: 334 KGCIAGTKKRVITLRKSLLVHHSRQAVEN 362
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 181 bits (440), Expect = 2e-44
Identities = 89/169 (52%), Positives = 116/169 (68%), Gaps = 1/169 (0%)
Frame = -2
Query: 773 RQKXAHIMESNLXGYHXGQS-EMGQRTSGEPIPVDSVLPKMK*LTALVSPRAKDTKVSLL 597
RQK AH+ME + G + + + + +PV+ V + + + + + K K
Sbjct: 174 RQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTS 233
Query: 596 VGTQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHK 417
+ P + +GLRKVACIGAWHP+RV+F+VARAGQKGYHHRTE+NKKIY+IGQG
Sbjct: 234 RWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLI 293
Query: 416 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 270
KDGK+IKNNAST+YDLS+KSI P+GGF HYGEV NDFVM +G + GT K
Sbjct: 294 KDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKK 342
Score = 66.1 bits (154), Expect = 1e-09
Identities = 30/39 (76%), Positives = 34/39 (87%)
Frame = -1
Query: 213 KINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 97
KI+LKFIDT+SKFGHGRFQT +K AFMG LKKDRI +E
Sbjct: 362 KIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKE 400
Score = 43.2 bits (97), Expect = 0.008
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = -3
Query: 295 KGCCMGPKKRIITLRKSLRVHTKRAALK 212
KGC +G KKR++TLRKSL V TKR AL+
Sbjct: 334 KGCVVGTKKRVLTLRKSLLVQTKRRALE 361
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 144 bits (348), Expect = 3e-33
Identities = 65/102 (63%), Positives = 81/102 (79%)
Frame = -2
Query: 584 RSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGK 405
+ P + KGLRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG+ ++G
Sbjct: 190 KKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEG- 248
Query: 404 VIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 279
KNN STE+DL++K+ITPMGGFP YG VN D++M +G + G
Sbjct: 249 --KNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLG 288
Score = 63.3 bits (147), Expect = 7e-09
Identities = 30/44 (68%), Positives = 35/44 (79%)
Frame = -1
Query: 231 QRGLH*KINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 100
+R H KINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 305 KRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 348
Score = 38.7 bits (86), Expect = 0.17
Identities = 19/37 (51%), Positives = 22/37 (59%)
Frame = -1
Query: 666 VAQDEMIDCIXXXXXXXXXXXTSRXHTKKLPRKTHQG 556
+A +MID I TSR HTKKLPRKTH+G
Sbjct: 163 IAHTQMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKG 199
Score = 38.7 bits (86), Expect = 0.17
Identities = 17/26 (65%), Positives = 20/26 (76%)
Frame = -3
Query: 295 KGCCMGPKKRIITLRKSLRVHTKRAA 218
+G +GPKKR+ITLRKSL TKR A
Sbjct: 283 RGAVLGPKKRLITLRKSLITQTKRVA 308
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 134 bits (324), Expect = 2e-30
Identities = 76/160 (47%), Positives = 98/160 (61%)
Frame = -2
Query: 770 QKXAHIMESNLXGYHXGQSEMGQRTSGEPIPVDSVLPKMK*LTALVSPRAKDTKVSLLVG 591
QK AH+ME + G H G S E + D ++ +K + K V
Sbjct: 169 QKKAHLMEIQVMG-HCGLSWR------EAVNQDEIIDVIK------ETKGNGYKGVTRVD 215
Query: 590 TQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKD 411
QR+ P R +G K+ C+GAWHP+RV+F+VA+ GQKGYHH + NKKI +IGQG KD
Sbjct: 216 IQRNCPERPIEGCPKL-CVGAWHPARVTFSVAQVGQKGYHHNGD-NKKICKIGQGYLIKD 273
Query: 410 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQG 291
GK+IKNNA TEY LS+KSI +GGF HYGEV NDF+ +G
Sbjct: 274 GKLIKNNAPTEYHLSDKSINLLGGFVHYGEVTNDFIRLKG 313
Score = 41.9 bits (94), Expect = 0.018
Identities = 21/39 (53%), Positives = 25/39 (64%)
Frame = -1
Query: 213 KINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 97
KI+ K DT+ K GHG FQT K AF+G LKK+ EE
Sbjct: 339 KIDPKLNDTTYKVGHGCFQTTEGKRAFIGPLKKECTAEE 377
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 130 bits (315), Expect = 3e-29
Identities = 69/164 (42%), Positives = 95/164 (57%), Gaps = 1/164 (0%)
Frame = -2
Query: 767 KXAHIMESNLXGYHXGQS-EMGQRTSGEPIPVDSVLPKMK*LTALVSPRAKDTKVSLLVG 591
K AH+ E + G Q E+ + + + +DSV + + + +
Sbjct: 230 KKAHVSEIQINGGTIAQKIELAKSLLEKEVRIDSVFQQSEACDVCAVTKGHGFTGVVKRW 289
Query: 590 TQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKD 411
P + +GLRKVACIGAWHPSRV +TVARAGQ GYHHRT +NKKIY++G+ + +
Sbjct: 290 GVACLPRKTHRGLRKVACIGAWHPSRVMYTVARAGQHGYHHRTHLNKKIYQLGRAVSME- 348
Query: 410 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 279
N A+T YDL+ K+ITPMGGF YG V ND+VM +G + G
Sbjct: 349 ----PNQATTAYDLTAKTITPMGGFVGYGTVRNDYVMLKGSVAG 388
Score = 61.7 bits (143), Expect = 2e-08
Identities = 30/44 (68%), Positives = 33/44 (75%)
Frame = -1
Query: 228 RGLH*KINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 97
R L KI LKFIDTSSK GHGRFQT +K+ + G LKKDRIR E
Sbjct: 406 RKLTEKITLKFIDTSSKIGHGRFQTKKEKSQWYGPLKKDRIRRE 449
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 97.9 bits (233), Expect = 3e-19
Identities = 49/102 (48%), Positives = 69/102 (67%)
Frame = -2
Query: 575 PVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 396
P + +GLRKVACIG W PSRV++T++RAGQKGYH RT NKKIY+IG +++
Sbjct: 223 PRKTHRGLRKVACIGPWTPSRVAWTISRAGQKGYHKRTLFNKKIYKIGS---EENFSYYS 279
Query: 395 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 270
N+ S D KS+ MGGF +G +NND+++ +G + G+ K
Sbjct: 280 NSLS---DSIVKSVNCMGGFKKFGFINNDYLIIKGSMTGSSK 318
Score = 39.5 bits (88), Expect = 0.096
Identities = 17/28 (60%), Positives = 23/28 (82%)
Frame = -1
Query: 213 KINLKFIDTSSKFGHGRFQTPADKAAFM 130
KI LK++DTSSK GHGR+++ ADK + M
Sbjct: 338 KIILKYVDTSSKRGHGRYESSADKFSKM 365
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 96.3 bits (229), Expect = 8e-19
Identities = 56/141 (39%), Positives = 82/141 (58%)
Frame = -2
Query: 692 GEPIPVDSVLPKMK*LTALVSPRAKDTKVSLLVGTQRSYPVRHTKGLRKVACIGAWHPSR 513
G+ + V VL + + L + + K T+ + + + +KG RKV IG WHP+R
Sbjct: 204 GKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPAR 263
Query: 512 VSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFP 333
V +TV AGQ G+HHRTE+NK++ IG+ +GK +K + +TE + ITP GGFP
Sbjct: 264 VMWTVPMAGQMGFHHRTELNKRLIAIGE-----NGK-LKLDENTEIE-----ITPKGGFP 312
Query: 332 HYGEVNNDFVMXQGLLHGT*K 270
HYG V +DF+M G + G K
Sbjct: 313 HYGIVRSDFMMIAGSVPGAIK 333
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 95.1 bits (226), Expect = 2e-18
Identities = 63/167 (37%), Positives = 92/167 (55%)
Frame = -2
Query: 770 QKXAHIMESNLXGYHXGQSEMGQRTSGEPIPVDSVLPKMK*LTALVSPRAKDTKVSLLVG 591
QK AH+ ES + + + + + +PV+ + +++ L + + + K K
Sbjct: 132 QKKAHLTESQVNRGPVAKLDWAHKKLEQQVPVNHIF-RVRRLFVIGTTKGKHYKGISSHW 190
Query: 590 TQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKD 411
+ P + + + ACI W +VA A QKG HH T +NKKIY+IGQG K+
Sbjct: 191 YTKKVPWKTHQEFHEAACI--WD----GLSVAWARQKGCHHCT-INKKIYKIGQGYLIKN 243
Query: 410 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 270
GK+IKNNAST+Y KSI+P+GG H G+V NDFVM + L GT K
Sbjct: 244 GKIIKNNASTDY---TKSISPLGGCIHCGKVTNDFVMLKDCLVGTKK 287
Score = 53.6 bits (123), Expect = 5e-06
Identities = 23/34 (67%), Positives = 26/34 (76%)
Frame = -1
Query: 213 KINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 112
K+N KFIDT+SKFGHG FQ +K FMG LKKD
Sbjct: 307 KVNFKFIDTTSKFGHGCFQIVGEKKGFMGPLKKD 340
>UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep:
Ribosomal protein L3 - Mus musculus (Mouse)
Length = 67
Score = 76.6 bits (180), Expect = 7e-13
Identities = 33/47 (70%), Positives = 40/47 (85%)
Frame = -2
Query: 410 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 270
GK+IKNNAST+YDLS+KSI P+GGF HYGEV NDF+M +G + GT K
Sbjct: 1 GKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKK 47
Score = 43.2 bits (97), Expect = 0.008
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = -3
Query: 295 KGCCMGPKKRIITLRKSLRVHTKRAALK 212
KGC +G KKR++TLRKSL V TKR AL+
Sbjct: 39 KGCVVGTKKRVLTLRKSLLVQTKRRALE 66
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 64.5 bits (150), Expect = 3e-09
Identities = 39/106 (36%), Positives = 56/106 (52%)
Frame = -2
Query: 596 VGTQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHK 417
+ TQ+ R K R V +G W+P R+ + V + GQ GYH RTE NK+I ++G
Sbjct: 219 IATQKRKHARTGKK-RHVGNLGPWNPHRIRWQVPQLGQTGYHQRTEYNKRILKMG----- 272
Query: 416 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 279
D +E+ ITP GGF HYG + ND++M +G + G
Sbjct: 273 --------------DKAEE-ITPAGGFLHYGLIRNDYIMLKGSIPG 303
>UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S ribosomal
protein L3 (L4); n=1; Macaca mulatta|Rep: PREDICTED:
similar to 60S ribosomal protein L3 (L4) - Macaca
mulatta
Length = 153
Score = 62.5 bits (145), Expect = 1e-08
Identities = 28/39 (71%), Positives = 33/39 (84%)
Frame = -1
Query: 213 KINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 97
KI+LKFIDT+SKFGHGRFQT +K AFMG LKKD+ +E
Sbjct: 112 KIDLKFIDTTSKFGHGRFQTIGEKKAFMGPLKKDQTAKE 150
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 62.5 bits (145), Expect = 1e-08
Identities = 38/95 (40%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Frame = -2
Query: 560 KGL-RKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNAS 384
KG+ R V IG W P V ++V GQ GYH RTE NK+I +IG NN
Sbjct: 226 KGVGRHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNKRILKIG------------NNGD 273
Query: 383 TEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 279
ITP GGF HYG + N++V+ +G + G
Sbjct: 274 --------EITPKGGFLHYGVIRNNYVVLKGSVQG 300
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 62.1 bits (144), Expect = 2e-08
Identities = 40/97 (41%), Positives = 51/97 (52%)
Frame = -2
Query: 569 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 390
R KG R + IG PSRV +TV AGQ GYH RTE NK+I +IG+ DG
Sbjct: 231 RKQKG-RHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHNKRILKIGE-----DG------ 278
Query: 389 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 279
+ +TP GGF +YG V D++M G + G
Sbjct: 279 ---------EEVTPRGGFVNYGVVRGDYIMIHGTVPG 306
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 60.9 bits (141), Expect = 4e-08
Identities = 48/160 (30%), Positives = 71/160 (44%), Gaps = 1/160 (0%)
Frame = -2
Query: 755 IMESNLXGYHXGQS-EMGQRTSGEPIPVDSVLPKMK*LTALVSPRAKDTKVSLLVGTQRS 579
IME L G G E G I +D V K L + + K + + +
Sbjct: 184 IMEVGLVGGDTGAKLEWAHERLGGEIGIDDVYEAGKELDVVGITKGKGWQGVIKRFGVKL 243
Query: 578 YPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVI 399
+++K R++ +G + V T+ +AGQ GYH RTE+NK+I RI
Sbjct: 244 LSHKNSKRRRQIGNMGDFGTGYVRKTIRQAGQMGYHKRTELNKRILRIS----------- 292
Query: 398 KNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 279
+ E +TP GGF HYGEV N +++ +G L G
Sbjct: 293 --------NPGESDVTPAGGFLHYGEVTNPYMVLEGSLPG 324
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 60.1 bits (139), Expect = 6e-08
Identities = 49/164 (29%), Positives = 72/164 (43%), Gaps = 1/164 (0%)
Frame = -2
Query: 767 KXAHIMESNLXGYHXG-QSEMGQRTSGEPIPVDSVLPKMK*LTALVSPRAKDTKVSLLVG 591
K IME L G G Q + GE + ++ V + + + + +
Sbjct: 160 KSPEIMEMGLTGGDLGAQLDWAAEKLGEELGIEDVFESGSDIDVIGVTKGYGNQGVVRRF 219
Query: 590 TQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKD 411
+ +++K R++ +G + V T+ +AGQ GYH RTE NK+I RI
Sbjct: 220 GVKLLSHKNSKRRRQIGNMGDFGTGYVRKTIRQAGQTGYHQRTEYNKRILRI-------- 271
Query: 410 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 279
A E E ITP GGF HYGEV N +++ QG L G
Sbjct: 272 -------AGEE----ESQITPAGGFLHYGEVKNHYMIIQGSLPG 304
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 59.3 bits (137), Expect = 1e-07
Identities = 33/91 (36%), Positives = 47/91 (51%)
Frame = -2
Query: 551 RKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYD 372
R++ +G W+PSRV TV + GQ GYH RTE+NK++ I G
Sbjct: 232 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDGDEP--------------- 276
Query: 371 LSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 279
TP GGFP+YGEV+ + + +G + G
Sbjct: 277 ------TPDGGFPNYGEVDGPYTLVKGSVPG 301
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 55.2 bits (127), Expect = 2e-06
Identities = 31/95 (32%), Positives = 49/95 (51%)
Frame = -2
Query: 560 KGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNAST 381
K +R++ +G P V +TV RAGQ G+H R E NK+I +G G+
Sbjct: 224 KTVRELGSLGPISPQNVMYTVPRAGQMGFHQRIEYNKRIMAVGSA-----GE-------- 270
Query: 380 EYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT 276
+ +I P GG+ H+G V D+++ +G + GT
Sbjct: 271 -----DDAINPSGGYKHFGMVKGDYIVLKGSVPGT 300
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 54.4 bits (125), Expect = 3e-06
Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 1/173 (0%)
Frame = -2
Query: 794 SNEAVXQRQKXAHIMESNLXGYHXG-QSEMGQRTSGEPIPVDSVLPKMK*LTALVSPRAK 618
S A QK +I E+++ G Q + G+ I +D + + + K
Sbjct: 147 SPSAAGLEQKKPYIFEASVSGGDIPKQFAHVKELLGKEIKIDQIFETGASVDVAAITKGK 206
Query: 617 DTKVSLLVGTQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYR 438
+ L + + K +R+V +G P V +TV RAGQ G+H R E +K+I
Sbjct: 207 GWQGVLKRWNVKKKQHKSRKTVREVGSLGPISPQSVMYTVPRAGQFGFHQRVEYDKRIMI 266
Query: 437 IGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 279
+G +T+ D + I P GGF H+G V DF++ +G + G
Sbjct: 267 MG---------------NTDDD--KLKINPDGGFKHFGLVKGDFIVLKGSVPG 302
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 54.0 bits (124), Expect = 4e-06
Identities = 26/53 (49%), Positives = 34/53 (64%)
Frame = -2
Query: 560 KGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKV 402
KG+RKV IG+ P R+ TV GQ GYH RTE NK I +IG+ ++ + G V
Sbjct: 218 KGVRKVGAIGSRGPGRIFPTVPMPGQMGYHRRTEYNKLIIKIGEPLNVEGGWV 270
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 53.2 bits (122), Expect = 7e-06
Identities = 33/100 (33%), Positives = 50/100 (50%)
Frame = -2
Query: 569 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 390
+H KG ++ +G P+ + F GQ G+H RTE NK+I ++G D +
Sbjct: 222 KHRKGHSRIGSVGPQKPA-IMFYTPFPGQLGFHQRTEYNKRILKVG------DAE----- 269
Query: 389 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 270
S K I P GG+PHYG V + F++ +G + G K
Sbjct: 270 -------SLKEINPPGGWPHYGLVRSQFIIVEGSVPGAVK 302
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 52.8 bits (121), Expect = 1e-05
Identities = 34/99 (34%), Positives = 47/99 (47%)
Frame = -2
Query: 575 PVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 396
P ++ K R + +G WHP V TV +AGQ GY RT N ++ + +G
Sbjct: 216 PRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGYQQRTISNVRVLKYSKG---------- 265
Query: 395 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 279
+A T I GGF HYG V ND+V+ G + G
Sbjct: 266 EDADT--------INVRGGFLHYGLVKNDYVLLFGSVPG 296
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 46.8 bits (106), Expect = 6e-04
Identities = 37/101 (36%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = -2
Query: 569 RHTKGLRKVACIGAWHPSRVSF-TVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKN 393
+H KG R+ IGA R +F +AGQ G+H RTE NK+I I +K
Sbjct: 231 KHRKGSRR---IGARSHGRSTFWETPQAGQTGFHRRTEYNKRILMIDDDGYK-------- 279
Query: 392 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 270
+TP GGF YG V + FVM G + GT K
Sbjct: 280 ------------VTPAGGFLRYGVVRSTFVMLSGSIPGTPK 308
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 45.6 bits (103), Expect = 0.001
Identities = 34/100 (34%), Positives = 46/100 (46%)
Frame = -2
Query: 569 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 390
+H KG RK+ G S+T + GQ G+H RTE NK+I +IG
Sbjct: 243 KHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD------------- 287
Query: 389 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 270
K I P GGF YG V N +V+ +G + G+ K
Sbjct: 288 -------EPKEINPAGGFVRYGIVRNTYVLLEGSILGSKK 320
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 38.7 bits (86), Expect = 0.17
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = -2
Query: 569 RHTKGLRKVACIGAWHPSRVSFT-VARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKN 393
+H KG RK IG+ P + + + GQ G+H RTE NK+I +IG
Sbjct: 285 KHRKGSRK---IGSRSPGFGTMSETPQPGQMGFHRRTEYNKRIIKIG------------- 328
Query: 392 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 279
++ +TP GGF YG V ++M G + G
Sbjct: 329 -------INGWEVTPKGGFLGYGIVYGPYIMLHGSIIG 359
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 37.9 bits (84), Expect = 0.29
Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 2/166 (1%)
Frame = -2
Query: 770 QKXAHIMESNLXGYHXGQSEMGQRTSGEPIPVDSVLPKMK*LTALVSPRAKDTKVSLLVG 591
+K I+E + G E + G+ + V+ V+ K + + + K + +
Sbjct: 179 KKAPDILEVKVGGSPVEALEYAKGKLGQLVDVEEVIEAGKFVDVIGVTKGKGFQGVIKRF 238
Query: 590 TQRSYPV--RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHK 417
+ P +H KG R+V +W S+ V + GQ GYH RT+ NK++ I K
Sbjct: 239 GVKELPKWHKHRKGSRRVGA-RSWGKGTSSY-VPQPGQMGYHRRTDYNKRVLMISDDPSK 296
Query: 416 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 279
I GG+ HYG V + +V+ +G + G
Sbjct: 297 --------------------INVEGGWLHYGLVKSKYVVLKGSVFG 322
>UniRef50_Q7Q3S5 Cluster: ENSANGP00000012392; n=2; Culicidae|Rep:
ENSANGP00000012392 - Anopheles gambiae str. PEST
Length = 250
Score = 35.5 bits (78), Expect = 1.6
Identities = 25/97 (25%), Positives = 35/97 (36%)
Frame = -2
Query: 569 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 390
RHT+ V + P S T +R + RT + +Y G N
Sbjct: 27 RHTQNSLNVPIVVQPAPVSASSTASRYASTAHEQRTGASGPVYYAPAAGASTYGSQYSNT 86
Query: 389 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 279
A++ S GGF HY N+DF G + G
Sbjct: 87 AASSSHNSRYKAGSAGGFVHYPIANDDFGRRFGAVGG 123
>UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-12
- Homo sapiens (Human)
Length = 103
Score = 35.5 bits (78), Expect = 1.6
Identities = 18/39 (46%), Positives = 20/39 (51%)
Frame = -2
Query: 239 CAYKEGCTKRSTSNSLTPRPSSVMVDSRRRLTRLHSWVH 123
C G +R T +SLTP PS M SR R HSW H
Sbjct: 65 CRRSGGLWRRLTLSSLTPPPSLAMAASRPWRRRKHSWDH 103
>UniRef50_Q2BFU2 Cluster: RTX toxins and related Ca2+-binding
protein; n=2; Bacillus sp. NRRL B-14911|Rep: RTX toxins
and related Ca2+-binding protein - Bacillus sp. NRRL
B-14911
Length = 1415
Score = 34.7 bits (76), Expect = 2.7
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -2
Query: 410 GKVIKNNASTEYD-LSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 279
G VI+ N D LS K++T MG EV NDF M ++HG
Sbjct: 299 GAVIEGNVKVSGDFLSLKNLTIMGDLEIAKEVENDFYMEDAIVHG 343
>UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1;
Plasmodium falciparum 3D7|Rep: Putative uncharacterized
protein - Plasmodium falciparum (isolate 3D7)
Length = 1482
Score = 33.5 bits (73), Expect = 6.3
Identities = 19/67 (28%), Positives = 35/67 (52%)
Frame = +3
Query: 294 LXHHKVVVYFTIMGETSHRCNGFLRQIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVM 473
L H ++ YF + +SH +II + +++NNFA +F+ L D V+F+ +
Sbjct: 463 LFFHSLIQYFVYLNNSSHILINHKDKIIFIKHLLYNNFAQMFLKYL---CDNYVYFTPIN 519
Query: 474 ITFLTST 494
I + S+
Sbjct: 520 ILSIYSS 526
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 769,220,819
Number of Sequences: 1657284
Number of extensions: 15585628
Number of successful extensions: 36806
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 35599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36787
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 68319938570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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