Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_K02
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   129   5e-31
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   129   5e-31
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    29   0.77 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.4  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   4.1  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   7.2  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    26   7.2  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   9.5  
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    25   9.5  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  129 bits (311), Expect = 5e-31
 Identities = 74/166 (44%), Positives = 96/166 (57%), Gaps = 2/166 (1%)
 Frame = -2

Query: 770 QKXAHIMESNLXGYHXGQS-EMGQRTSGEPIPVDSVLPKMK*LTALVSPRAKDTK-VSLL 597
           QK AH+ME  + G       E  +    + + + S   + + +  +   R K  +  +  
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTAR 232

Query: 596 VGTQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHK 417
            GT+R  P +  +GLRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G   
Sbjct: 233 WGTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG--- 288

Query: 416 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 279
            D K    NAST++D +EK ITPMGGF  YG V NDFVM  G   G
Sbjct: 289 DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330



 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 24/33 (72%), Positives = 30/33 (90%)
 Frame = -1

Query: 210 INLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 112
           ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 354 VSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 36.3 bits (80), Expect = 0.005
 Identities = 16/27 (59%), Positives = 19/27 (70%)
 Frame = -3

Query: 292 GCCMGPKKRIITLRKSLRVHTKRAALK 212
           G   GP KR++TLRKSL  HT R AL+
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALE 352


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  129 bits (311), Expect = 5e-31
 Identities = 74/166 (44%), Positives = 96/166 (57%), Gaps = 2/166 (1%)
 Frame = -2

Query: 770 QKXAHIMESNLXGYHXGQS-EMGQRTSGEPIPVDSVLPKMK*LTALVSPRAKDTK-VSLL 597
           QK AH+ME  + G       E  +    + + + S   + + +  +   R K  +  +  
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTAR 232

Query: 596 VGTQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHK 417
            GT+R  P +  +GLRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G   
Sbjct: 233 WGTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG--- 288

Query: 416 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 279
            D K    NAST++D +EK ITPMGGF  YG V NDFVM  G   G
Sbjct: 289 DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330



 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 24/33 (72%), Positives = 30/33 (90%)
 Frame = -1

Query: 210 INLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 112
           ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 354 VSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 36.3 bits (80), Expect = 0.005
 Identities = 16/27 (59%), Positives = 19/27 (70%)
 Frame = -3

Query: 292 GCCMGPKKRIITLRKSLRVHTKRAALK 212
           G   GP KR++TLRKSL  HT R AL+
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALE 352


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 402 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 500
           NFA+L+  SL ++ +F++H +T    +   T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 369 QIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 491
           ++ L RC++   F +LF  S S +  FL   S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 133 HGYTQEGSYSRRSCGYHNPS 74
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 354 NGFLRQIILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 482
           N FL  +  SRC V  N+ I + V S    ++F++     M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 649 HFILGNTESTGIGSPDVLWPISLCPXWYPXKLD 747
           + +LGNT ST  G+P+ + P  L    Y   +D
Sbjct: 814 NMLLGNTTSTFCGTPEFMAPEILLEQQYSKDVD 846


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 414 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNA 539
           LF+D LS   D L+H   ++ +    T  S  H      SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 724 EDKVKWAREHLENLSLSILCCP 659
           E  + WA+E+++    S+LC P
Sbjct: 337 EQTITWAKEYIKKAKDSLLCLP 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,185,872
Number of Sequences: 5004
Number of extensions: 65817
Number of successful extensions: 172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)