Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_K02
(798 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 145 3e-35
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 145 3e-35
01_07_0362 + 43063345-43063420,43064176-43064244,43064348-430644... 32 0.46
07_01_0761 + 5849466-5850677 31 1.1
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188... 28 7.5
05_01_0600 + 5381879-5381995,5382061-5382216,5382521-5382604,538... 28 7.5
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 145 bits (352), Expect = 3e-35
Identities = 77/166 (46%), Positives = 103/166 (62%), Gaps = 1/166 (0%)
Frame = -2
Query: 773 RQKXAHIMESNLXGYHXGQS-EMGQRTSGEPIPVDSVLPKMK*LTALVSPRAKDTKVSLL 597
+QK AH+ME + G + G + + IPVD+V K + + + + K + +
Sbjct: 175 KQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVT 234
Query: 596 VGTQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHK 417
P + +GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG
Sbjct: 235 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG----- 289
Query: 416 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 279
K G+ + A TE+D +EK ITPMGGFPHYG V D++M +G G
Sbjct: 290 KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVG 334
Score = 45.6 bits (103), Expect = 5e-05
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = -3
Query: 295 KGCCMGPKKRIITLRKSLRVHTKRAALKD 209
KGCC+GPKKR++TLR+SL T R AL++
Sbjct: 329 KGCCVGPKKRVVTLRQSLLKQTSRLALEE 357
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -1
Query: 213 KINLKFIDTSSKFGHGRFQTPADK 142
+I LKFIDTSSKFGHGRFQT +K
Sbjct: 357 EIKLKFIDTSSKFGHGRFQTTDEK 380
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 145 bits (352), Expect = 3e-35
Identities = 77/166 (46%), Positives = 103/166 (62%), Gaps = 1/166 (0%)
Frame = -2
Query: 773 RQKXAHIMESNLXGYHXGQS-EMGQRTSGEPIPVDSVLPKMK*LTALVSPRAKDTKVSLL 597
+QK AH+ME + G + G + + IPVD+V K + + + + K + +
Sbjct: 175 KQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVT 234
Query: 596 VGTQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHK 417
P + +GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG
Sbjct: 235 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG----- 289
Query: 416 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 279
K G+ + A TE+D +EK ITPMGGFPHYG V D++M +G G
Sbjct: 290 KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVG 334
Score = 51.2 bits (117), Expect = 9e-07
Identities = 23/32 (71%), Positives = 25/32 (78%)
Frame = -1
Query: 213 KINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 118
+I LKFIDTSSKFGHGRFQT +K F G LK
Sbjct: 357 EIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
Score = 45.6 bits (103), Expect = 5e-05
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = -3
Query: 295 KGCCMGPKKRIITLRKSLRVHTKRAALKD 209
KGCC+GPKKR++TLR+SL T R AL++
Sbjct: 329 KGCCVGPKKRVVTLRQSLLKQTSRLALEE 357
>01_07_0362 +
43063345-43063420,43064176-43064244,43064348-43064454,
43064561-43064608
Length = 99
Score = 32.3 bits (70), Expect = 0.46
Identities = 22/70 (31%), Positives = 32/70 (45%)
Frame = -3
Query: 280 GPKKRIITLRKSLRVHTKRAALKDQPQIH*HLVQVRSWSIPDAG*QGCIHGYTQEGSYSR 101
GP++R T R SL T ALKD H H++QV+ P G + +G+ + S
Sbjct: 16 GPRRRP-TRRPSLSYDTNETALKDAFSQHGHIIQVKVICHPVTG-KSKGYGFVKFASEDE 73
Query: 100 RSCGYHNPSG 71
+ H G
Sbjct: 74 AAAALHKMGG 83
>07_01_0761 + 5849466-5850677
Length = 403
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -2
Query: 608 VSLLVGTQRSYPVRHTKGLRKVACI--GAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 435
V+LLVG R V V+ + G HP SFT+ RA H K+ RI
Sbjct: 129 VALLVGNDRRLRVLDAAASAAVSLVPDGEHHPINCSFTLGRAASSSGEH------KVLRI 182
Query: 434 GQGIH 420
G +H
Sbjct: 183 GTVVH 187
>08_02_0918 -
22617388-22617693,22617799-22617848,22618538-22618817,
22619654-22620340,22622870-22622944,22623150-22623285,
22624801-22625093,22625776-22626597
Length = 882
Score = 28.3 bits (60), Expect = 7.5
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Frame = -2
Query: 518 SRVSFTVARAGQKGYHHRTEMNKKIYRIGQG----------IHKKDGKVIKNNASTEYDL 369
++V F + GY H + +N ++ I G IH+ D + E L
Sbjct: 360 AQVIFMNRESANNGYMHTSSVNYELETIRSGTWLDVEHPRKIHRLDLDAVDQQKQLEKYL 419
Query: 368 SEKSITPMGGFPHYGEVNN 312
SEKS P+ FP V++
Sbjct: 420 SEKSNIPIPPFPDSSSVSS 438
>05_01_0600 +
5381879-5381995,5382061-5382216,5382521-5382604,
5382708-5382833,5383801-5383845,5384423-5384554,
5384682-5384777,5384880-5385041,5385156-5385300,
5385753-5385825,5386002-5386062,5386419-5386529,
5386620-5387093,5387173-5387207,5387760-5388318
Length = 791
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -3
Query: 277 PKKRIITLRKSLRVHTKRAALKDQPQIH*HLVQVRSWS 164
PK+R T+ +++ AL D+P++H + +++WS
Sbjct: 551 PKRRKRTIMNDRQINEIEKALIDEPEMHKNAALLQAWS 588
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,189,792
Number of Sequences: 37544
Number of extensions: 446733
Number of successful extensions: 1036
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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