Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_K02
(798 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi... 141 6e-34
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi... 141 6e-34
At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi... 140 1e-33
At3g60400.1 68416.m06755 mitochondrial transcription termination... 29 3.6
At4g36150.1 68417.m05145 disease resistance protein (TIR-NBS-LRR... 28 6.2
At3g42770.1 68416.m04468 F-box family protein contains F-box dom... 28 6.2
At5g22400.1 68418.m02613 rac GTPase activating protein, putative... 28 8.3
>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 141 bits (341), Expect = 6e-34
Identities = 75/166 (45%), Positives = 102/166 (61%), Gaps = 1/166 (0%)
Frame = -2
Query: 773 RQKXAHIMESNLXGYHXGQS-EMGQRTSGEPIPVDSVLPKMK*LTALVSPRAKDTKVSLL 597
+QK AH+ME + G Q + + IP+++V K + + + + K + +
Sbjct: 175 KQKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVT 234
Query: 596 VGTQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHK 417
P + +GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTE+NKKIYR+G
Sbjct: 235 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLG----- 289
Query: 416 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 279
K G + A TEYD +EK +TPMGGFPHYG V +D++M +G G
Sbjct: 290 KVG-TEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVG 334
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = -3
Query: 295 KGCCMGPKKRIITLRKSLRVHTKRAALKD 209
KGCC+GPKKR++TLR+SL T R AL++
Sbjct: 329 KGCCVGPKKRVVTLRQSLLTQTSRLALEE 357
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/33 (57%), Positives = 23/33 (69%)
Frame = -1
Query: 213 KINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 115
+I LKFIDT+S FGHGRFQT +K F + K
Sbjct: 357 EIKLKFIDTASIFGHGRFQTSLEKMRFYNRVTK 389
>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 141 bits (341), Expect = 6e-34
Identities = 75/166 (45%), Positives = 102/166 (61%), Gaps = 1/166 (0%)
Frame = -2
Query: 773 RQKXAHIMESNLXGYHXGQS-EMGQRTSGEPIPVDSVLPKMK*LTALVSPRAKDTKVSLL 597
+QK AH+ME + G Q + + IP+++V K + + + + K + +
Sbjct: 175 KQKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVT 234
Query: 596 VGTQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHK 417
P + +GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTE+NKKIYR+G
Sbjct: 235 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLG----- 289
Query: 416 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 279
K G + A TEYD +EK +TPMGGFPHYG V +D++M +G G
Sbjct: 290 KVG-TEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVG 334
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = -3
Query: 295 KGCCMGPKKRIITLRKSLRVHTKRAALKD 209
KGCC+GPKKR++TLR+SL T R AL++
Sbjct: 329 KGCCVGPKKRVVTLRQSLLTQTSRLALEE 357
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/33 (57%), Positives = 23/33 (69%)
Frame = -1
Query: 213 KINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 115
+I LKFIDT+S FGHGRFQT +K F + K
Sbjct: 357 EIKLKFIDTASIFGHGRFQTSLEKMRFYNRVTK 389
>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
to ribosomal protein GI:806279 from [Arabidopsis
thaliana]
Length = 390
Score = 140 bits (339), Expect = 1e-33
Identities = 74/166 (44%), Positives = 102/166 (61%), Gaps = 1/166 (0%)
Frame = -2
Query: 773 RQKXAHIMESNLXGYHXGQS-EMGQRTSGEPIPVDSVLPKMK*LTALVSPRAKDTKVSLL 597
+QK AH+ E + G + + + +PVD++ K + + + + K + +
Sbjct: 175 KQKKAHLNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVT 234
Query: 596 VGTQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHK 417
P + +GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+YR+G
Sbjct: 235 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRVG----- 289
Query: 416 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 279
K G+ ++A TEYD +EK ITPMGGFPHYG V D++M +G G
Sbjct: 290 KVGQE-THSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVG 334
Score = 43.6 bits (98), Expect = 2e-04
Identities = 16/29 (55%), Positives = 24/29 (82%)
Frame = -3
Query: 295 KGCCMGPKKRIITLRKSLRVHTKRAALKD 209
KGCC+GPKKR++TLR++L T R A+++
Sbjct: 329 KGCCVGPKKRVVTLRQTLLKQTSRLAMEE 357
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/33 (60%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = -1
Query: 213 KINLKFIDTSSKFGHGRFQTPADKAAFMG-TLK 118
+I LKFID +S GHGRFQT +KA F G T+K
Sbjct: 357 EIKLKFIDAASNGGHGRFQTSQEKAKFYGRTIK 389
>At3g60400.1 68416.m06755 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 558
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -2
Query: 476 YHHRTEMNKKIYRIGQGIHKKDGK--VIKNNASTEYDLSEKSITPMGGFPHYG 324
Y MNK Y G+ K+D +++N A +DL + I+ G H+G
Sbjct: 262 YSEEALMNKAGYFCRFGVSKEDAALLILRNPAIMNFDLEKPVISVTGMLKHFG 314
>At4g36150.1 68417.m05145 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1179
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = -3
Query: 562 PRVLGKLPALELGILLGCRSL*LVLVRKVIITVLK*TRKSIVLDKESTKRMAKLLK 395
P LGKL AL+ +L GC L V I +K + ++LD + K M KLL+
Sbjct: 782 PEFLGKLKALQELVLSGCSKL---KTFSVPIETMK-CLQILLLDGTALKEMPKLLR 833
>At3g42770.1 68416.m04468 F-box family protein contains F-box domain
Pfam:PF00646
Length = 532
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = +3
Query: 375 ILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNAGNFPK 554
++ CI + +LF+DS+ + + F T T Y + H MP + K
Sbjct: 151 VVPNCISLPSLKVLFLDSIWFEVPQFLIFLTACPALEDLTIYQKPHSVGMPYHISSKTIK 210
Query: 555 TLGVSY 572
L V+Y
Sbjct: 211 RLSVTY 216
>At5g22400.1 68418.m02613 rac GTPase activating protein, putative
similar to rac GTPase activating protein 1 [Lotus
japonicus] GI:3695059; contains Pfam profile PF00620:
RhoGAP domain
Length = 466
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -2
Query: 209 STSNSLTPRPSSVMVDSRRRLTRLHSWVHSRR 114
S+S+S +P PSS+ SR T L S H+RR
Sbjct: 17 SSSSSSSPSPSSLSYASRSNATLLISSDHNRR 48
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,877,064
Number of Sequences: 28952
Number of extensions: 355051
Number of successful extensions: 860
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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