Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_J22
         (845 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr...    29   3.9  
At5g64540.1 68418.m08111 hypothetical protein                          28   6.8  

>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
           protein kinase family protein contains leucine
           rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to leucine-rich
           repeat transmembrane protein kinase 2 [Zea mays]
           gi|3360291|gb|AAC27895
          Length = 768

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
 Frame = +1

Query: 589 PPXRCXGGASPXXXXWXH-CPXXVFTLGXRVLVYCTATGTEPVKFPSRXDXEHXVYFLWX 765
           P  +  G A+P      + C   VF+LG  V++    TG  P  F       H     W 
Sbjct: 654 PTSQMAGYAAPEVEYGSYTCQSDVFSLG--VVMLELLTGRRP--FDRTRPRGHQTLAQWA 709

Query: 766 PPKLHFAHFLLXXXNPXXHGS 828
            P+LH    L    +P  HG+
Sbjct: 710 IPRLHDIDALTRMVDPSLHGA 730


>At5g64540.1 68418.m08111 hypothetical protein 
          Length = 440

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 536 PXRLPLDHH*PRFPRSSPILWQM 468
           P +LP DH+ P+FP ++P+  Q+
Sbjct: 208 PQQLPYDHYSPQFPCANPLHLQL 230


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,452,011
Number of Sequences: 28952
Number of extensions: 137259
Number of successful extensions: 276
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)