Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_J21
(816 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 34 0.16
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 1.4
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 3.3
03_05_0183 - 21681673-21682524 29 4.4
07_03_1086 + 23858419-23859423,23859527-23859610 29 5.8
08_02_1508 + 27602104-27602265,27602398-27602449,27603357-276047... 28 7.7
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 28 7.7
01_06_0695 - 31292622-31293317 28 7.7
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 33.9 bits (74), Expect = 0.16
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +2
Query: 83 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDF 214
PS TP ER S+D PR Y R+RD K+ S D+
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRDY 408
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -1
Query: 351 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 217
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 438 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 340
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>03_05_0183 - 21681673-21682524
Length = 283
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 650 SQAFIATLLFDPSMSALPIIAKQNSPS 570
SQAF A LL D + +A+P++ Q P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 28.7 bits (61), Expect = 5.8
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = -1
Query: 498 LLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA-----SKAEASLAES 334
LL CD N A + LVHAL AA A +A L A AS+ +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188
Query: 333 GKDMLTVEPRESGGSK 286
G L V E+GG++
Sbjct: 189 GAIPLLVSLLETGGAR 204
>08_02_1508 +
27602104-27602265,27602398-27602449,27603357-27604757,
27604833-27606140,27606594-27607435
Length = 1254
Score = 28.3 bits (60), Expect = 7.7
Identities = 37/145 (25%), Positives = 52/145 (35%), Gaps = 4/145 (2%)
Frame = +2
Query: 35 PGAGLSLNR--SQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSI 208
P AG+ SQ + LPS T RQ++ S S TE P A +K S
Sbjct: 266 PSAGMISTSFSSQREQPLPSETIRQDKPSPRKESNFFTTTEKTPSTPRSRAPTTQKQPSS 325
Query: 209 DFRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRH--NP 382
F P+ + R + + K + S T S D + L+ +A H
Sbjct: 326 TFFTPSTTPKIPQRTDTDISSSKDAPYQTKPS--ETTSKEAHDKSHLSGFFKARSHTDET 383
Query: 383 ADGSFXXXXXXXXXXTKCPKLRFLS 457
A + TK PK R +S
Sbjct: 384 ATPTKHSPQEDSKTSTKIPKTRDIS 408
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 28.3 bits (60), Expect = 7.7
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -1
Query: 360 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRKSMLSVFFL 187
K+ AS A G D P R GG K+ S + SKR + R + F +L L
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63
Query: 186 TRASR 172
TRA+R
Sbjct: 64 TRAAR 68
>01_06_0695 - 31292622-31293317
Length = 231
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +2
Query: 35 PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 169
P L Q D PS++ SST S P HR L P R
Sbjct: 3 PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,465,254
Number of Sequences: 37544
Number of extensions: 514340
Number of successful extensions: 1424
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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