Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_J21
         (816 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54020.2 68414.m06155 myrosinase-associated protein, putative...    31   0.91 
At5g18830.2 68418.m02238 squamosa promoter-binding protein-like ...    30   1.6  
At3g53440.2 68416.m05898 expressed protein                             30   1.6  
At3g53440.1 68416.m05897 expressed protein                             30   1.6  
At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138...    30   2.1  
At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain...    29   2.8  
At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) conta...    29   3.7  
At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei...    29   3.7  
At4g27120.2 68417.m03898 expressed protein                             28   8.5  
At4g27120.1 68417.m03897 expressed protein                             28   8.5  

>At1g54020.2 68414.m06155 myrosinase-associated protein, putative
           strong similarity to myrosinase-associated proteins
           GI:1769968, GI:1769970, GI:1216389,GI:1216391 from
           [Brassica napus]; contains InterPro Entry IPR001087
           Lipolytic enzyme, G-D-S-L family
          Length = 372

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -2

Query: 662 LACGSQAFIATLLFDPSMSALPIIAKQNSPSVGLFT 555
           + C S + +  LL  P +  L  I+ QN P+VGLFT
Sbjct: 1   MECSSVSVLGILLVFPLLHNLVTISGQNLPAVGLFT 36


>At5g18830.2 68418.m02238 squamosa promoter-binding protein-like 7
           (SPL7) identical to squamosa promoter binding
           protein-like 7 [Arabidopsis thaliana] GI:5931635;
           contains Pfam profile PF03110: SBP domain
          Length = 775

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -1

Query: 525 TVVRQVSFTLLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGL-CLNASKAEA 349
           T+V+++    L+ C CD +      N      +H   ++   +K P AGL C    +A+ 
Sbjct: 632 TLVKKMEPDSLVHCTCDCDVRLLHENMDLASDIHRKHQSPIESKDPEAGLDCKERIQADC 691

Query: 348 SLAESGKD 325
           S    GK+
Sbjct: 692 SPDSGGKE 699


>At3g53440.2 68416.m05898 expressed protein
          Length = 512

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = +2

Query: 107 RKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDFRDPNGLRRRVSRFECETRLVKSHC 286
           RKS+    +P  R+     L++RD++VK + D     +P    RR        RLV S  
Sbjct: 4   RKSTVVLPQPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSD 63

Query: 287 LEPPDSRGSTVSIS 328
               DSR   ++IS
Sbjct: 64  SPIEDSRSKKLNIS 77


>At3g53440.1 68416.m05897 expressed protein
          Length = 512

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = +2

Query: 107 RKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDFRDPNGLRRRVSRFECETRLVKSHC 286
           RKS+    +P  R+     L++RD++VK + D     +P    RR        RLV S  
Sbjct: 4   RKSTVVLPQPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSD 63

Query: 287 LEPPDSRGSTVSIS 328
               DSR   ++IS
Sbjct: 64  SPIEDSRSKKLNIS 77


>At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'growth regulator protein -related'  based on similarity
           to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
           tabacum], which, due to scienitific fraud was retracted.
           Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
           PMID:10400497.
          Length = 568

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 604 ADIEGSKSNVAMNAWLPQASYPW 672
           AD+ GS  NV M AW P+    W
Sbjct: 122 ADVNGSSHNVLMEAWKPRVKSVW 144


>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein
          Length = 564

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +2

Query: 110 KSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDFRDPNGLRRRVSRFECETRLVKSH 283
           K S +  +PR R  LY D  +  + + K+T S+D    NG +   S+ E   R+ + H
Sbjct: 142 KESQEVIKPRKRMRLYGDGGAVSSHLHKETSSVDV---NGFQVLPSQAESVKRIFERH 196


>At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) contains
           Pfam PF02732 : ERCC4 domain; contains TIGRFAM TIGR00596:
           DNA repair protein (rad1); almost identical to 5' repair
           endonuclease (GI:8926611) [Arabidopsis thaliana]
          Length = 956

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
 Frame = +2

Query: 44  GLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDFRDP 223
           G S+ R +H+A + + +  ++   +TD +   +  E + D  S      KK       DP
Sbjct: 492 GSSVGRQEHEALMAAASSIRKLGKTTDMASGNNNPEPHVDKASCTKGKAKK-------DP 544

Query: 224 NGLRRRVSRFECETRLVKSHCLEPPDS--RGSTVSISLPDSA 343
             LRR +     +T   K   L  P++  + +  S S P  A
Sbjct: 545 TSLRRSLRSCNKKTTNSKPEILPGPENEEKANEASTSAPQEA 586


>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
           hsp20 family protein contains Pfam profile: PF00011
           Hsp20/alpha crystallin family
          Length = 285

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 359 RPKPA*PNPARICSLWSPESREALNNVTLLVAFRIQNAR-RDVEAHLDRGN 210
           RPK   P  A + ++WSP S  A +  + +VA  +  A   D+   +D  N
Sbjct: 169 RPKLDLPKLANLGTVWSPRSNVAESTHSYVVAIELPGASINDIRVEVDNTN 219


>At4g27120.2 68417.m03898 expressed protein
          Length = 298

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = -1

Query: 420 LGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSK-QCDFTSRVSHSKRE 244
           + RA GG ++        AS + +++ E+G      +  E+GG++ +          +RE
Sbjct: 47  VARAGGGRRMRRRPAASGASSSTSNVQENGSGSEDEDEDEAGGTQARASKKKEKKRQERE 106

Query: 243 TRRRSPFGSRKS 208
            +R++   +R+S
Sbjct: 107 AQRQAEEATRES 118


>At4g27120.1 68417.m03897 expressed protein
          Length = 298

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = -1

Query: 420 LGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSK-QCDFTSRVSHSKRE 244
           + RA GG ++        AS + +++ E+G      +  E+GG++ +          +RE
Sbjct: 47  VARAGGGRRMRRRPAASGASSSTSNVQENGSGSEDEDEDEAGGTQARASKKKEKKRQERE 106

Query: 243 TRRRSPFGSRKS 208
            +R++   +R+S
Sbjct: 107 AQRQAEEATRES 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,099,868
Number of Sequences: 28952
Number of extensions: 383762
Number of successful extensions: 965
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)