Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_J19
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   152   3e-37
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   145   3e-35
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   121   5e-28
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP...    33   0.29 
At5g23690.1 68418.m02777 polynucleotide adenylyltransferase fami...    31   1.2  
At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin fa...    29   4.7  
At1g72710.1 68414.m08408 casein kinase, putative similar to case...    28   8.3  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  152 bits (368), Expect = 3e-37
 Identities = 75/143 (52%), Positives = 96/143 (67%), Gaps = 1/143 (0%)
 Frame = -3

Query: 741 PFGQGCCXEXXPRTXGXTXIAGRFTTRCFY*XRSKLHFREPXLLIVLDPAQDHQPITEAS 562
           P+GQ    +    T G   IAGR T   F   + +  F EP LLI+ DP  DHQPI E +
Sbjct: 85  PYGQRAVLKFAQYT-GANAIAGRHTPGTFT-NQMQTSFSEPRLLILTDPRTDHQPIKEGA 142

Query: 561 YVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVV 382
             NIP+IA C+TDSP+RFVDI IP N K  HSIG ++WLLAR VL++RG +   Q+WDV+
Sbjct: 143 LGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIAAGQKWDVM 202

Query: 381 VDLFFYRDPEESE-KDEQQAKEQ 316
           VDLFFYR+PEE++ +DE +A  Q
Sbjct: 203 VDLFFYREPEETKPEDEDEAGPQ 225


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  145 bits (352), Expect = 3e-35
 Identities = 71/141 (50%), Positives = 92/141 (65%)
 Frame = -3

Query: 741 PFGQGCCXEXXPRTXGXTXIAGRFTTRCFY*XRSKLHFREPXLLIVLDPAQDHQPITEAS 562
           P+GQ    +    T G   IAGR T   F   + +  F EP LLI+ DP  DHQPI E +
Sbjct: 86  PYGQRAVLKFAQYT-GVNAIAGRHTPGTFT-NQMQTSFSEPRLLILTDPRTDHQPIKEGA 143

Query: 561 YVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVV 382
             NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLAR VL++RG +   Q+WDV+
Sbjct: 144 LGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVM 203

Query: 381 VDLFFYRDPEESEKDEQQAKE 319
           VDLFFYR+PEE++++  +  E
Sbjct: 204 VDLFFYREPEEAKQEGDEEAE 224


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  121 bits (292), Expect = 5e-28
 Identities = 61/122 (50%), Positives = 77/122 (63%)
 Frame = -3

Query: 741 PFGQGCCXEXXPRTXGXTXIAGRFTTRCFY*XRSKLHFREPXLLIVLDPAQDHQPITEAS 562
           P+GQ    +    T G   IAGR T   F   + +  F EP LLI+ DP  DHQPI E +
Sbjct: 86  PYGQRAVLKFAQYT-GVNAIAGRHTPGTFT-NQMQTSFSEPRLLILTDPRTDHQPIKEGA 143

Query: 561 YVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVV 382
             NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLAR VL++RG +   Q+WDV+
Sbjct: 144 LGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVM 203

Query: 381 VD 376
           V+
Sbjct: 204 VN 205


>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
           identical to SP|Q9GCB9 Mitochondrial ribosomal protein
           S2 {Arabidopsis thaliana}; contains Pfam profile
           PF00318: ribosomal protein S2
          Length = 219

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 621 PXLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 472
           P  ++V D  +    I EAS + IPV+A+ + + PL F + I  P   + S
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181


>At5g23690.1 68418.m02777 polynucleotide adenylyltransferase family
           protein low similarity to SP|P13685 Poly(A) polymerase
           (EC 2.7.7.19) {Escherichia coli O157:H7}; contains Pfam
           profile PF01743: polyA polymerase family protein
          Length = 527

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = -1

Query: 341 RMNNKPRNRLWYQLNQK*LLLSMKTGMKHWSQWLHGLK 228
           +++++PR+R W QLN K L LS     K   + L+GLK
Sbjct: 54  KVSDEPRDREWKQLNSKDLGLSSSMIAKSTRKVLNGLK 91


>At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin
           family protein contains Pfam domain, PF01190: Pollen
           proteins Ole e I family
          Length = 146

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -3

Query: 525 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWD 388
           D  L   ++A+ C TKS   +    +  ++ V  +   +P  +RWD
Sbjct: 49  DHVLEGAEVAVLCITKSGEVVNYQAFTNSKGVYTVAETMPESERWD 94


>At1g72710.1 68414.m08408 casein kinase, putative similar to casein
           kinase I, delta isoform [Arabidopsis thaliana]
           SWISS-PROT:P42158
          Length = 465

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 339 PFHFLQGHGRRTNQPQHPSAGHGEAHHEASTLHVPTTTTSN 461
           P +FL G GRR NQ      G  + + +++  H+P     N
Sbjct: 131 PDNFLMGLGRRANQVYVIDFGLAKKYRDSNHQHIPYRENKN 171


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,904,029
Number of Sequences: 28952
Number of extensions: 288555
Number of successful extensions: 746
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)