Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_J14
         (779 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   3.6  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           23   3.6  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   4.8  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   6.3  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 97  FQSFSVLQISGFG 59
           +Q+FS L ISGFG
Sbjct: 117 YQTFSNLNISGFG 129


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +3

Query: 354 PPCKLLTATNLTSHHANYNFTGSTSLTRCYSHTE 455
           P C   +++   SH +  +F+ ++S T    H E
Sbjct: 194 PTCSEASSSPTPSHSSESSFSAASSYTNTIYHQE 227


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/57 (21%), Positives = 20/57 (35%)
 Frame = +3

Query: 249 PPXQSRRSARFSRTGWAATAEVSPPATCADSQDILPPCKLLTATNLTSHHANYNFTG 419
           PP     +   S +G  + A   PPAT +               ++ +  A Y+  G
Sbjct: 12  PPAPQSAATPISSSGMTSPAAAPPPATTSSGSPASVASNASAPLHIPAKRAAYDCEG 68


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 241 TGPPNDEITPPARTADIGAPA 179
           T P   +I P  +T D G PA
Sbjct: 325 TAPLKAKIEPQVQTIDFGRPA 345


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,931
Number of Sequences: 336
Number of extensions: 3929
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21065107
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)