Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_J14
(779 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical pr... 30 2.1
U67954-4|AAM54180.1| 345|Caenorhabditis elegans Wrapper/rega-1/... 30 2.1
D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein. 30 2.1
AF456364-1|AAL60235.1| 344|Caenorhabditis elegans immunoglobuli... 30 2.1
AC006720-9|AAF60443.2| 480|Caenorhabditis elegans Hypothetical ... 30 2.1
U39999-6|AAA81107.2| 198|Caenorhabditis elegans Hypothetical pr... 24 2.8
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 29 4.9
U55374-4|AAB36866.2| 589|Caenorhabditis elegans Immunoglobulin-... 28 6.5
U55374-3|ABS19462.1| 591|Caenorhabditis elegans Immunoglobulin-... 28 6.5
Z50795-1|CAA90662.1| 502|Caenorhabditis elegans Hypothetical pr... 28 8.6
>Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical
protein F40E10.1 protein.
Length = 605
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/54 (37%), Positives = 22/54 (40%)
Frame = +1
Query: 388 PATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAAS 549
P TT TT P + V+PT T ARTST T Q P T S
Sbjct: 478 PTTTSTTTTTAPITVPTVSPTTTTTRQTTTTARTST----TTTTTQAPPTTTTS 527
>U67954-4|AAM54180.1| 345|Caenorhabditis elegans
Wrapper/rega-1/klingon homologprotein 1, isoform c
protein.
Length = 345
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/74 (25%), Positives = 31/74 (41%)
Frame = -2
Query: 451 VWE*HRVREVEPVKL*FAWWLVRFVAVRSLHGGKMSCESAQVAGGETSAVAAHPVRENRA 272
VW + E +K + V+ H GK +C + +AG + + + H +
Sbjct: 151 VWTKQAAKLPEDIKREHGGARIVITEVKKHHAGKYNCLAENIAGSDRATIDIHVAEPLQG 210
Query: 271 DRLDCXGGRPTGPP 230
+R GRP GPP
Sbjct: 211 ER----EGRP-GPP 219
>D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein.
Length = 605
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/54 (37%), Positives = 22/54 (40%)
Frame = +1
Query: 388 PATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAAS 549
P TT TT P + V+PT T ARTST T Q P T S
Sbjct: 478 PTTTSTTTTTAPITVPTVSPTTTTTRQTTTTARTST----TTTTTQAPPTTTTS 527
>AF456364-1|AAL60235.1| 344|Caenorhabditis elegans immunoglobulin
domain-containingprotein WRK-1C protein.
Length = 344
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/74 (25%), Positives = 31/74 (41%)
Frame = -2
Query: 451 VWE*HRVREVEPVKL*FAWWLVRFVAVRSLHGGKMSCESAQVAGGETSAVAAHPVRENRA 272
VW + E +K + V+ H GK +C + +AG + + + H +
Sbjct: 150 VWTKQAAKLPEDIKREHGGARIVITEVKKHHAGKYNCLAENIAGSDRATIDIHVAEPLQG 209
Query: 271 DRLDCXGGRPTGPP 230
+R GRP GPP
Sbjct: 210 ER----EGRP-GPP 218
>AC006720-9|AAF60443.2| 480|Caenorhabditis elegans Hypothetical
protein Y17G9B.1 protein.
Length = 480
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 134 VLWQVQPETSTCVPELQCVTDKWFWLPLYVPFKV 33
+LWQ+ +TC P LQ ++W L L + FK+
Sbjct: 421 ILWQL---ITTCKPRLQVDKERWIQLLLNIKFKI 451
>U39999-6|AAA81107.2| 198|Caenorhabditis elegans Hypothetical
protein F41G3.10 protein.
Length = 198
Score = 24.2 bits (50), Expect(2) = 2.8
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +1
Query: 463 TANTCQARTSTHFTGKTCIRQRNPNTAASPDT 558
T C +T T TC+ NP T S T
Sbjct: 83 TCGYCTGTATTTRTSTTCVDLTNPTTGVSDCT 114
Score = 23.8 bits (49), Expect(2) = 2.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 313 SHLRLPVQTHKTFYHHANFLPQQILPATTQTTI 411
S L + V +TF L QQ+L TT+T++
Sbjct: 10 SLLEVVVALMETFSQSPQHLQQQLLSTTTRTSV 42
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/58 (27%), Positives = 21/58 (36%)
Frame = +1
Query: 385 LPATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAASPDT 558
LP TT+ T+ P + + +KPT T T K P T P T
Sbjct: 591 LPFTTEQTVTTEEPTTAEKSTATQKPTTTQESVSTEKTSTTKKASTTEEPTTTDEPTT 648
>U55374-4|AAB36866.2| 589|Caenorhabditis elegans
Immunoglobulin-like cell adhesionmolecule family protein
3, isoform a protein.
Length = 589
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 215 RDLVVWRTRRPASXTVEAICP 277
R +V WR R+P V+A CP
Sbjct: 293 RPIVYWRMRKPNGDVVDAACP 313
>U55374-3|ABS19462.1| 591|Caenorhabditis elegans
Immunoglobulin-like cell adhesionmolecule family protein
3, isoform b protein.
Length = 591
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 215 RDLVVWRTRRPASXTVEAICP 277
R +V WR R+P V+A CP
Sbjct: 293 RPIVYWRMRKPNGDVVDAACP 313
>Z50795-1|CAA90662.1| 502|Caenorhabditis elegans Hypothetical
protein R166.1 protein.
Length = 502
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 306 AEVSPPATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTR 437
A + P T S + PP TA + + NF+G+ S+TR
Sbjct: 205 AGILPATTTNVSAAVPPPSSRATANVFSGNSIGLNFSGAASVTR 248
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,580,035
Number of Sequences: 27780
Number of extensions: 392700
Number of successful extensions: 1288
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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