Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_J14
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.8  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   1.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.2  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          23   4.2  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   7.4  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   9.7  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +3

Query: 501  HRKNLHPPAEPEHRRIARHERTGRLILQVTTNSDVSIFLP 620
            H + LH P +     ++R    G+  ++V   SD   F+P
Sbjct: 1482 HNEKLHIPKDKSVSVLSRENEAGQKEVKVLLGSDKIKFVP 1521


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/39 (20%), Positives = 19/39 (48%)
 Frame = +3

Query: 447 HTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARHER 563
           H  +A ++HL +  +H ++++     A  +  +   H R
Sbjct: 186 HQSQAQQQHLQAHEQHMMYQQQQQSQAASQQSQPGMHPR 224


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -2

Query: 241 TGPPNDEITPPARTADIGAPA 179
           T P   EI P  +T D G PA
Sbjct: 305 TAPLGAEIEPSTQTIDFGRPA 325


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
 Frame = +3

Query: 318 PPATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKH- 494
           PPA    S   LP     T T  T+  A    T +T+ T            HL + H H 
Sbjct: 96  PPA----SSTSLPATITTTTTTTTTTTATAAATATTTATGLIKQETLQRHHHLQNHHHHL 151

Query: 495 -ALHRKNLHPPAEPEHRRIARHER 563
            +   ++ H P + + ++  R ++
Sbjct: 152 QSTAVQDHHRPYQQQQQQQQRQQQ 175


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 16/73 (21%), Positives = 22/73 (30%)
 Frame = +3

Query: 318 PPATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHA 497
           PP+    S    P    +  T L  HH  Y    +T   R          +   S   + 
Sbjct: 130 PPSVSLSSPPREPGTPRINFTKLKRHHPRYKRPRTTFEPRATDSRHYDRYKEEESNENYN 189

Query: 498 LHRKNLHPPAEPE 536
              K  H   +PE
Sbjct: 190 WEHKETHIDWQPE 202


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 171 SRSAGAPISAVRAGGVISSFGGPV 242
           S S  +P+S+  + G+ + FGG +
Sbjct: 69  SSSGDSPVSSHSSNGIHTGFGGSI 92


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 6   FFFFLRLHSDLEW 44
           F+FF+ + S+L W
Sbjct: 86  FYFFMSMRSELPW 98


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -1

Query: 416 RKIVVCVVAGKICCGK 369
           +K+  C + GK+ C K
Sbjct: 3   KKLFTCQLCGKVLCSK 18


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,783
Number of Sequences: 438
Number of extensions: 4757
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)