Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_J12
(804 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 157 2e-39
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 157 2e-39
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 29 0.77
SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear t... 28 1.4
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.4
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 4.1
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 26 5.5
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 26 7.2
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 26 7.2
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 25 9.5
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 157 bits (380), Expect = 2e-39
Identities = 74/116 (63%), Positives = 86/116 (74%)
Frame = -1
Query: 624 KGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 445
+GKG +G T+RW TK+LPRKTH+GLRKVACIGAWHP+ V +TVARAG GY HRT++N K
Sbjct: 222 RGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSK 281
Query: 444 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 277
IYRIG G D K NAST++D +EK ITPMGGF YG V NDFVM G G
Sbjct: 282 IYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330
Score = 91.9 bits (218), Expect = 1e-19
Identities = 41/61 (67%), Positives = 49/61 (80%)
Frame = -2
Query: 290 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 111
G GP KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385
Query: 110 D 108
D
Sbjct: 386 D 386
Score = 54.8 bits (126), Expect = 1e-08
Identities = 26/62 (41%), Positives = 37/62 (59%)
Frame = -3
Query: 802 HTQMKLLNSDKRRXTLWNPTXTVVPFEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTQ 623
HTQ++ +++ L DKV+WAREH EK + + S F Q+EMID IGVT+
Sbjct: 163 HTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTR 222
Query: 622 GQ 617
G+
Sbjct: 223 GK 224
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 157 bits (380), Expect = 2e-39
Identities = 74/116 (63%), Positives = 86/116 (74%)
Frame = -1
Query: 624 KGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 445
+GKG +G T+RW TK+LPRKTH+GLRKVACIGAWHP+ V +TVARAG GY HRT++N K
Sbjct: 222 RGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSK 281
Query: 444 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 277
IYRIG G D K NAST++D +EK ITPMGGF YG V NDFVM G G
Sbjct: 282 IYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330
Score = 91.9 bits (218), Expect = 1e-19
Identities = 41/61 (67%), Positives = 49/61 (80%)
Frame = -2
Query: 290 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 111
G GP KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385
Query: 110 D 108
D
Sbjct: 386 D 386
Score = 54.8 bits (126), Expect = 1e-08
Identities = 26/62 (41%), Positives = 37/62 (59%)
Frame = -3
Query: 802 HTQMKLLNSDKRRXTLWNPTXTVVPFEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTQ 623
HTQ++ +++ L DKV+WAREH EK + + S F Q+EMID IGVT+
Sbjct: 163 HTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTR 222
Query: 622 GQ 617
G+
Sbjct: 223 GK 224
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 29.1 bits (62), Expect = 0.77
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 400 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 498
NFA+L+ SL ++ +F++H +T + T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409
>SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear
transport factor Nxt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 123
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 590 QREVTPLYPLPLGDTNAVNHFILGKHRIDRDRFLQMFSGPFHFV 721
Q ++ L P G T +V + G+ +D ++ Q +S FH V
Sbjct: 62 QHRISTLDAQPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLV 105
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 367 QIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 489
++ L RC++ F +LF S S + FL S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 129 HGYTQEGSYSRRSCGYHNPS 70
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 630 SPKGKGYKGVTSRWHTKKLPRKTHK 556
+PK K + G T WH+ PR T K
Sbjct: 412 TPKSK-HAGSTQEWHSHTTPRSTSK 435
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 352 NGFLRQIILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 480
N FL + SRC V N+ I + V S ++F++ M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 25.8 bits (54), Expect = 7.2
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -1
Query: 705 PENIWRNLSLSILCLPKMK*LTALVSPKGKGYKGVTSRWHTKKLPRKT 562
PE W+ +SLS L LPK + Y SR H KLP++T
Sbjct: 631 PECRWQKVSLSELVLPKKVKI---------AYMKAVSRVHPDKLPQQT 669
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 412 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNA 537
LF+D LS D L+H ++ + T S H SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,434,739
Number of Sequences: 5004
Number of extensions: 73604
Number of successful extensions: 224
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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