Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_J12
(804 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0) 188 6e-48
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34) 108 6e-24
SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 1e-20
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_52432| Best HMM Match : NDUF_B7 (HMM E-Value=0.47) 29 3.3
SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002) 29 3.3
SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08) 28 7.7
>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
Length = 338
Score = 188 bits (457), Expect = 6e-48
Identities = 83/94 (88%), Positives = 90/94 (95%)
Frame = -1
Query: 624 KGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 445
KG G+KGVT RW TKKLPRKTHKGLRKVACIGAWHP+RVSF+VARAGQ GYHHRTE+NKK
Sbjct: 224 KGHGFKGVTYRWGTKKLPRKTHKGLRKVACIGAWHPARVSFSVARAGQAGYHHRTELNKK 283
Query: 444 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPM 343
IYRIGQGIHKKDGKVIKNNASTEYDL++KSI+PM
Sbjct: 284 IYRIGQGIHKKDGKVIKNNASTEYDLTDKSISPM 317
Score = 54.0 bits (124), Expect = 1e-07
Identities = 28/62 (45%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = -3
Query: 802 HTQMKLLNSDKRRXTLWN-PTXTVVPFEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVT 626
HTQ KLL +++ + +KV W RE LE P PV VF+ DEMID IGVT
Sbjct: 164 HTQQKLLKMRQKKAHIMEIQVNGGKDVAEKVDWCRERLENPAPVRKVFSPDEMIDVIGVT 223
Query: 625 QG 620
+G
Sbjct: 224 KG 225
>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
Length = 347
Score = 108 bits (259), Expect = 6e-24
Identities = 50/66 (75%), Positives = 55/66 (83%)
Frame = -2
Query: 293 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 114
KGC +GPKKR++TLRKSL VHT R A EKI LKFIDTSSKFGHGRFQ PA+K AFMG LK
Sbjct: 231 KGCVVGPKKRVLTLRKSLLVHTSRDAAEKITLKFIDTSSKFGHGRFQHPAEKRAFMGMLK 290
Query: 113 KDRIRE 96
DR +E
Sbjct: 291 SDREKE 296
Score = 38.3 bits (85), Expect = 0.007
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = -1
Query: 342 GGFPHYGEVNNDFVMXQGLLHG 277
GGFPHYG+VN DF+M +G + G
Sbjct: 215 GGFPHYGQVNEDFLMVKGCVVG 236
>SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 58
Score = 97.1 bits (231), Expect = 1e-20
Identities = 42/45 (93%), Positives = 45/45 (100%)
Frame = -1
Query: 477 GYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPM 343
GYHHRTE+NKKIYRIGQGIHKKDGKVIKNNASTEYDL++KSITPM
Sbjct: 2 GYHHRTELNKKIYRIGQGIHKKDGKVIKNNASTEYDLTDKSITPM 46
>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1887
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 649 FHLGQTQNRQG*VSPDVLWPISLCPR--MVPPXKLDSIM*XFFCRCLTASFEC 801
FHLGQ R VS + +S CPR + + +M C+C+T S EC
Sbjct: 819 FHLGQENVRTAIVSCNNTPILSKCPRNQVTKSGEYYRVMQSSECKCVTQSSEC 871
>SB_52432| Best HMM Match : NDUF_B7 (HMM E-Value=0.47)
Length = 1250
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -3
Query: 721 DKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTQG 620
D++ W H P P Q++ D IGVT G
Sbjct: 213 DEILWLVRHCCNPAPRSRKLTQEDFFDSIGVTAG 246
>SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)
Length = 458
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 27 NVYFHGLHLRLRSSRWGCGSRSFFANTILLE 119
N+Y HG+ L LR +GCGS +L++
Sbjct: 368 NIYSHGVRLFLRYLGYGCGSDGALPYCVLMD 398
>SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 561
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 325 IMGETSHRCNGFLRQIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLT 486
++GE FLR++ +S C++ N+ F + D L+ F++ + F T
Sbjct: 274 VLGENFQDLARFLRELQISPCLMVLNYPSFFSADIQKLNDALMFFTSRPLLFET 327
>SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 366
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -2
Query: 272 KKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMG 123
K R++ +K ++H+ + K ++F+ SKF H T A A G
Sbjct: 317 KDRLLEWKKERQIHSFSSTTLKARIRFVAAMSKFAHTTEDTTAWDEATKG 366
>SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08)
Length = 545
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -1
Query: 159 IPDAG*QGCIHGYTQEGSYSRRSCGYHNPSGCCAALSVVREN 34
I D G CIH +T +G Y C + + G REN
Sbjct: 410 ISDDG-ANCIHVFTLDGQYVSNECSWESHEGYTHIAVTAREN 450
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,350,489
Number of Sequences: 59808
Number of extensions: 593029
Number of successful extensions: 1317
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1314
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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