Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_J12
(804 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi... 169 2e-42
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi... 167 1e-41
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi... 167 1e-41
At3g60400.1 68416.m06755 mitochondrial transcription termination... 29 3.6
At2g13690.1 68415.m01510 PRLI-interacting factor, putative simil... 29 4.8
At4g19710.2 68417.m02895 bifunctional aspartate kinase/homoserin... 28 6.3
At4g19710.1 68417.m02894 bifunctional aspartate kinase/homoserin... 28 6.3
At1g71400.1 68414.m08246 disease resistance family protein / LRR... 28 6.3
At5g22400.1 68418.m02613 rac GTPase activating protein, putative... 28 8.3
At1g68480.1 68414.m07823 zinc finger (C2H2 type) family protein ... 28 8.3
>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
to ribosomal protein GI:806279 from [Arabidopsis
thaliana]
Length = 390
Score = 169 bits (411), Expect = 2e-42
Identities = 77/116 (66%), Positives = 92/116 (79%)
Frame = -1
Query: 624 KGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 445
KGKGY+GV +RW +LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK
Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKK 284
Query: 444 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 277
+YR+G K G+ ++A TEYD +EK ITPMGGFPHYG V D++M +G G
Sbjct: 285 VYRVG-----KVGQE-THSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVG 334
Score = 81.8 bits (193), Expect = 5e-16
Identities = 37/61 (60%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
Frame = -2
Query: 293 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMG-TL 117
KGCC+GPKKR++TLR++L T R A+E+I LKFID +S GHGRFQT +KA F G T+
Sbjct: 329 KGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGRTI 388
Query: 116 K 114
K
Sbjct: 389 K 389
Score = 44.8 bits (101), Expect = 7e-05
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = -3
Query: 802 HTQMKLLNSDKRRXTLWNPTX-TVVPFEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVT 626
HTQ++ + K++ N KV +A EK +PVD++F +DEMID IGVT
Sbjct: 165 HTQIRKMKGLKQKKAHLNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVT 224
Query: 625 QGQ 617
+G+
Sbjct: 225 KGK 227
>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 167 bits (405), Expect = 1e-41
Identities = 76/116 (65%), Positives = 91/116 (78%)
Frame = -1
Query: 624 KGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 445
KGKGY+GV +RW +LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTE+NKK
Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKK 284
Query: 444 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 277
IYR+G K G + A TEYD +EK +TPMGGFPHYG V +D++M +G G
Sbjct: 285 IYRLG-----KVG-TEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVG 334
Score = 85.8 bits (203), Expect = 3e-17
Identities = 38/61 (62%), Positives = 46/61 (75%)
Frame = -2
Query: 293 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 114
KGCC+GPKKR++TLR+SL T R ALE+I LKFIDT+S FGHGRFQT +K F +
Sbjct: 329 KGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVT 388
Query: 113 K 111
K
Sbjct: 389 K 389
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = -3
Query: 802 HTQMKLLNSDKRRXT-LWNPTXTVVPFEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVT 626
HTQ++ + K++ + KV +A EK IP+++VF +DEMID IGVT
Sbjct: 165 HTQIRKMKGLKQKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVT 224
Query: 625 QGQ 617
+G+
Sbjct: 225 KGK 227
>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 167 bits (405), Expect = 1e-41
Identities = 76/116 (65%), Positives = 91/116 (78%)
Frame = -1
Query: 624 KGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 445
KGKGY+GV +RW +LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTE+NKK
Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKK 284
Query: 444 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 277
IYR+G K G + A TEYD +EK +TPMGGFPHYG V +D++M +G G
Sbjct: 285 IYRLG-----KVG-TEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVG 334
Score = 85.8 bits (203), Expect = 3e-17
Identities = 38/61 (62%), Positives = 46/61 (75%)
Frame = -2
Query: 293 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 114
KGCC+GPKKR++TLR+SL T R ALE+I LKFIDT+S FGHGRFQT +K F +
Sbjct: 329 KGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVT 388
Query: 113 K 111
K
Sbjct: 389 K 389
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = -3
Query: 802 HTQMKLLNSDKRRXT-LWNPTXTVVPFEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVT 626
HTQ++ + K++ + KV +A EK IP+++VF +DEMID IGVT
Sbjct: 165 HTQIRKMKGLKQKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVT 224
Query: 625 QGQ 617
+G+
Sbjct: 225 KGK 227
>At3g60400.1 68416.m06755 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 558
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -1
Query: 474 YHHRTEMNKKIYRIGQGIHKKDGK--VIKNNASTEYDLSEKSITPMGGFPHYG 322
Y MNK Y G+ K+D +++N A +DL + I+ G H+G
Sbjct: 262 YSEEALMNKAGYFCRFGVSKEDAALLILRNPAIMNFDLEKPVISVTGMLKHFG 314
>At2g13690.1 68415.m01510 PRLI-interacting factor, putative similar
to PRLI-interacting factor G [Arabidopsis thaliana]
GI:11139264 (PMID:9765207); supporting cDNA
gi|26450291|dbj|AK117606.1|
Length = 544
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +1
Query: 649 FHLGQTQNRQG*VSPDVLWPISLCPRMVPPXKLDSIM*XFFCR 777
F+ +T+N Q +S ++W I+ C + P +L S++ C+
Sbjct: 292 FNSNETENLQDSLSKKLVWSITSCSDVNPRNELKSLVKGLLCK 334
>At4g19710.2 68417.m02895 bifunctional aspartate kinase/homoserine
dehydrogenase, putative / AK-HSDH, putative similar to
gb|X71364 [PIR|S46497] aspartate kinase / homoserine
dehydrogenase from Arabidopsis thaliana
Length = 916
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 633 PMQSIISSWANTESTGIGFSRCSLAHFTLSSNGTTV 740
P + I+ + T G G RC L F LS+ TTV
Sbjct: 34 PRRLILPRFRKTTGGGGGLIRCELPDFHLSATATTV 69
>At4g19710.1 68417.m02894 bifunctional aspartate kinase/homoserine
dehydrogenase, putative / AK-HSDH, putative similar to
gb|X71364 [PIR|S46497] aspartate kinase / homoserine
dehydrogenase from Arabidopsis thaliana
Length = 859
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 633 PMQSIISSWANTESTGIGFSRCSLAHFTLSSNGTTV 740
P + I+ + T G G RC L F LS+ TTV
Sbjct: 34 PRRLILPRFRKTTGGGGGLIRCELPDFHLSATATTV 69
>At1g71400.1 68414.m08246 disease resistance family protein / LRR
family protein contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5D
[Lycopersicon esculentum] gi|3894393|gb|AAC78596
Length = 847
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -1
Query: 621 GKGYKGVTSRWHTKKLPRKTHKGLRKVAC 535
G Y W T+K RK HK L V C
Sbjct: 817 GHFYTSHNHEWFTEKFGRKQHKALTSVKC 845
>At5g22400.1 68418.m02613 rac GTPase activating protein, putative
similar to rac GTPase activating protein 1 [Lotus
japonicus] GI:3695059; contains Pfam profile PF00620:
RhoGAP domain
Length = 466
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -3
Query: 205 STSNSLTPRPSSVMVDSRRRLTRLHSWVHSRR 110
S+S+S +P PSS+ SR T L S H+RR
Sbjct: 17 SSSSSSSPSPSSLSYASRSNATLLISSDHNRR 48
>At1g68480.1 68414.m07823 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 253
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 767 KXHIMESNXNGGTIRGQSEMGQRTSGETYPCRFC 666
K + E + +G + S+ G+ SG+ Y CRFC
Sbjct: 23 KQALEEGSSSGQRKKKGSKEGKDESGKVYECRFC 56
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,223,485
Number of Sequences: 28952
Number of extensions: 400796
Number of successful extensions: 1108
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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