Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_J09
(815 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 32 0.43
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 31 0.75
AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical ... 31 0.99
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 29 5.3
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 29 5.3
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 28 7.0
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 28 7.0
U58755-13|AAB00702.1| 348|Caenorhabditis elegans Collagen prote... 28 9.2
AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical ... 28 9.2
AC006701-4|AAK68403.2| 606|Caenorhabditis elegans Hypothetical ... 28 9.2
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 32.3 bits (70), Expect = 0.43
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -1
Query: 671 SKMSLRNK---VTLYKTCIRPVMTYASVVFAHAARIHLKSFQIIQSRFCR 531
+K S NK + LYKT IRP + Y +VV + + K+ + +Q+ F R
Sbjct: 210 NKYSTSNKKLMILLYKTFIRPRLEYGTVVSSPTKKSDEKTIESVQNAFTR 259
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 31.5 bits (68), Expect = 0.75
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3
Query: 810 PIPXAPKVKYLGVTLDSRMTFRPHIKTV 727
PI + + LG+ DS++TF+PHIK +
Sbjct: 188 PISPSNIARDLGILTDSKLTFKPHIKKI 215
>AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical
protein K09H9.4 protein.
Length = 328
Score = 31.1 bits (67), Expect = 0.99
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -1
Query: 647 VTLYKTCIRPVMTYASVVFAHAARIHLKSFQIIQSRFCR 531
+ LYKT IRP + Y +VV + + K+ + +Q+ F R
Sbjct: 191 ILLYKTFIRPRLEYGTVVSSPTKKSDEKAIESVQNAFTR 229
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 510 PRGSDGYPAKTGLNNLKG 563
PRG DG+P + GL+ L G
Sbjct: 1153 PRGDDGFPGRDGLDGLPG 1170
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 510 PRGSDGYPAKTGLNNLKG 563
PRG DG+P + GL+ L G
Sbjct: 1410 PRGDDGFPGRDGLDGLPG 1427
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 510 PRGSDGYPAKTGLNNLKG 563
PRG DG+P + GL+ L G
Sbjct: 1409 PRGDDGFPGRDGLDGLPG 1426
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 488 HDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYI 372
H D + E+ ++ + S RH + E+P IV +G YI
Sbjct: 5374 HSDEEDENDAEVIDSEFYRHSQEQNNEEDPSIVESGEYI 5412
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 488 HDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYI 372
H D + E+ ++ + S RH + E+P IV +G YI
Sbjct: 5374 HSDEEDENDAEVIDSEFYRHSQEQNNEEDPSIVESGEYI 5412
>U58755-13|AAB00702.1| 348|Caenorhabditis elegans Collagen protein
113 protein.
Length = 348
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 501 PDEPRGSDGYPAKTGLNNLKGF*VYAGRVSEH 596
P+ PRG G P +TG + +G GR+ EH
Sbjct: 153 PNGPRGPTGPPGETGPSGPEGPPGNPGRIGEH 184
>AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical
protein Y40B1A.5 protein.
Length = 134
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 365 PADRMESSRRRPKHVISDPPDP 300
P ++RRR +HV+S PP P
Sbjct: 4 PVVEFTTARRRKRHVVSTPPPP 25
>AC006701-4|AAK68403.2| 606|Caenorhabditis elegans Hypothetical
protein Y104H12D.3 protein.
Length = 606
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +3
Query: 303 IRRIRDDVFRATSTAFHSVRRIGNVVTGGHDERVLVSC 416
+R++ ++ + T FH + VV GG E ++++C
Sbjct: 176 VRKMEAEILKMTCAMFHGGKDSCGVVAGGGTEALMLAC 213
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,813,590
Number of Sequences: 27780
Number of extensions: 339834
Number of successful extensions: 876
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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