Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_J06
         (809 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               246   2e-65
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)                   36   0.039
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.63 
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)           31   1.5  
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)                  30   2.6  
SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)                 29   4.5  
SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)                29   4.5  
SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)               29   4.5  
SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.5  
SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)         29   4.5  
SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)                 29   4.5  
SB_28360| Best HMM Match : Phosphodiest (HMM E-Value=0)                29   5.9  
SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)                   28   7.8  
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)                      28   7.8  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  246 bits (602), Expect = 2e-65
 Identities = 112/149 (75%), Positives = 128/149 (85%)
 Frame = -2

Query: 805 VLAARAVVAIENPADVXVISSRPFGQRAVLKFAAHTGXTXIAGRFTPGAFTNQIQAAFRE 626
           +LAAR +V IENPADV VIS+RP+GQRA+LK+A+HTG T IAGRFTPG FTNQIQAAFRE
Sbjct: 59  LLAARIIVTIENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFRE 118

Query: 625 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 446
           PRLLIV DP  DHQP+TEASYVNIPVIA CNTDSPLR VD+AIPCN K  HSIGLM+WLL
Sbjct: 119 PRLLIVCDPRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLL 178

Query: 445 AREVLRLRGVLPRDQRWDVVVDLFFYRXP 359
           AREVLR+RG + R   W+++ DL+FYR P
Sbjct: 179 AREVLRMRGSISRALPWEIMPDLYFYRDP 207


>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1772

 Score = 35.9 bits (79), Expect = 0.039
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +3

Query: 378  KSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDLVLHGIAMST-NLSGE---SVLHKA 545
            K+TT   RWS+G TP      ++   H   I    L+ HG   ST NL+ E    VL++ 
Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPSTKNLTTEQAKQVLNEN 1453

Query: 546  ITGMLTY 566
              G +TY
Sbjct: 1454 ELGTMTY 1460


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = -1

Query: 683  CGTFHTRCFY*PDPSCIP*TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGH 504
            C   H+ C      SCI   S+ DCI  C+ PS     F C+ +C         T++C +
Sbjct: 866  CKKCHSSC-----SSCIG-PSANDCI-TCSDPSNALIGFTCKANCTPGQFKNTATRVCEN 918

Query: 503  CYP 495
            C+P
Sbjct: 919  CHP 921


>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
          Length = 432

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = -2

Query: 607 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 512
           LDP  +HQPIT+ +   I ++A   TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147


>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
          Length = 315

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 475 HSIGLMWWLLAREVLRLRGVLP 410
           H  G +WW+L  E LR + VLP
Sbjct: 46  HDDGSVWWVLTSESLRAKAVLP 67


>SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 199  SCFWSTPCSRRMVCPGTR*VEHNCRRTSRRHRSA 98
            +C W+ P   R+  PG R   H    T+R H +A
Sbjct: 904  TCSWALPAHYRVHVPGQRSASHEAFDTTRPHENA 937


>SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)
          Length = 397

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 626 TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHC 501
           TSSLD + PC+  S H+   +  + C C+  +++    C  C
Sbjct: 331 TSSLDTLAPCSF-SCHFACDVNTNQCICYYGYQMSDNKCKAC 371


>SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)
          Length = 225

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +2

Query: 533 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNXR 691
           V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN R
Sbjct: 155 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 207


>SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)
          Length = 418

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 373 RTNQPQHPSAGHGEA-HHEASTLHVPTTTTSNQ*SGKTWCC 492
           R  QP H ++ +  A HH A  LH P  +TS   +   W C
Sbjct: 176 RDGQPCHGASMNNFAYHHAADFLHYPPVSTSYMPAHPYWTC 216


>SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = +3

Query: 366 R*KNKSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDL---VLHGIAMSTNLSGESVL 536
           R  N+  T   ++   STP      + N+  ++P EW ++     H   +   L+GES  
Sbjct: 3   RGSNRRPTFKYKFGDSSTPFYSALKKQNDRSMRPWEWHEMKARYSHAQTLINALTGESKY 62

Query: 537 HKAITG 554
              +TG
Sbjct: 63  EFTLTG 68


>SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)
          Length = 280

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +2

Query: 533 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNXR 691
           V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN R
Sbjct: 196 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 248


>SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 965

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +2

Query: 533  VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNXR 691
            V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN R
Sbjct: 876  VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 928


>SB_28360| Best HMM Match : Phosphodiest (HMM E-Value=0)
          Length = 483

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 609 TIKRRGSRNAAWIWLVKAPGVKRPAIXVXPVCAANFS 719
           T+++RG ++A + W       +RP+     VC+ N S
Sbjct: 122 TMEKRGRKSATYFWPSSTSYERRPSFFADHVCSVNCS 158


>SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1601

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 417 TPRSLNTSRANNHHIKPIEWEDLVLHGIAMSTNLSGESVLH 539
           T +SLN S  N   + P EW + V+ G+     LSG ++L+
Sbjct: 864 TAQSLNVSVDNLKFLAPTEWRE-VIPGLKQEILLSGSNMLN 903


>SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)
          Length = 428

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -2

Query: 631 REPR-LLIVLDPAQDHQPITEASYVNIPVIALC-NTDSPLRFVDIAIPCNTK 482
           RE R +++ +D A  H P  + +Y NI +I L  NT S  + +D  I  N K
Sbjct: 255 RENRNIMLFMDNAPCHTPSLKNTYCNIKIIFLSKNTTSKTQPLDSGIIANWK 306


>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
          Length = 487

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 368 VEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVGR-LGVAWDSNVHK 514
           V  Q+  + P  +T  HT+     T   P HQ + +GR  G   DSNV +
Sbjct: 242 VTNQMRGHEPRSITYNHTSITAPLTTGYPDHQGSYMGRYAGSVADSNVSR 291


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,145,420
Number of Sequences: 59808
Number of extensions: 509713
Number of successful extensions: 1198
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)