Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_J06
         (809 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   214   5e-56
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   209   2e-54
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   193   1e-49
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP...    32   0.39 
At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   2.1  
At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin fa...    29   4.8  
At2g34150.1 68415.m04180 expressed protein                             29   4.8  
At5g23690.1 68418.m02777 polynucleotide adenylyltransferase fami...    28   8.4  
At4g26490.1 68417.m03812 expressed protein                             28   8.4  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  214 bits (523), Expect = 5e-56
 Identities = 96/148 (64%), Positives = 116/148 (78%)
 Frame = -2

Query: 802 LAARAVVAIENPADVXVISSRPFGQRAVLKFAAHTGXTXIAGRFTPGAFTNQIQAAFREP 623
           +AAR +VAIENP D+ V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EP
Sbjct: 64  MAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEP 123

Query: 622 RLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLA 443
           RLLI+ DP  DHQPI E +  NIP+IA C+TDSP+RFVDI IP N K  HSIG ++WLLA
Sbjct: 124 RLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLA 183

Query: 442 REVLRLRGVLPRDQRWDVVVDLFFYRXP 359
           R VL++RG +   Q+WDV+VDLFFYR P
Sbjct: 184 RMVLQMRGTIAAGQKWDVMVDLFFYREP 211


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  209 bits (510), Expect = 2e-54
 Identities = 95/148 (64%), Positives = 114/148 (77%)
 Frame = -2

Query: 802 LAARAVVAIENPADVXVISSRPFGQRAVLKFAAHTGXTXIAGRFTPGAFTNQIQAAFREP 623
           +AAR +VAIENP D+ V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EP
Sbjct: 65  MAARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEP 124

Query: 622 RLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLA 443
           RLLI+ DP  DHQPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLA
Sbjct: 125 RLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLA 184

Query: 442 REVLRLRGVLPRDQRWDVVVDLFFYRXP 359
           R VL++RG +   Q+WDV+VDLFFYR P
Sbjct: 185 RMVLQMRGTILAAQKWDVMVDLFFYREP 212


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  193 bits (471), Expect = 1e-49
 Identities = 88/141 (62%), Positives = 108/141 (76%)
 Frame = -2

Query: 802 LAARAVVAIENPADVXVISSRPFGQRAVLKFAAHTGXTXIAGRFTPGAFTNQIQAAFREP 623
           +AAR +VAIENP D+ V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EP
Sbjct: 65  MAARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEP 124

Query: 622 RLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLA 443
           RLLI+ DP  DHQPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLA
Sbjct: 125 RLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLA 184

Query: 442 REVLRLRGVLPRDQRWDVVVD 380
           R VL++RG +   Q+WDV+V+
Sbjct: 185 RMVLQMRGTILAAQKWDVMVN 205


>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
           identical to SP|Q9GCB9 Mitochondrial ribosomal protein
           S2 {Arabidopsis thaliana}; contains Pfam profile
           PF00318: ribosomal protein S2
          Length = 219

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 625 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 476
           P  ++V D  +    I EAS + IPV+A+ + + PL F + I  P   + S
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 670 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 569
           TP   TNQ++ A  E     +LDP     PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653


>At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin
           family protein contains Pfam domain, PF01190: Pollen
           proteins Ole e I family
          Length = 146

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -2

Query: 529 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWD 392
           D  L   ++A+ C TKS   +    +  ++ V  +   +P  +RWD
Sbjct: 49  DHVLEGAEVAVLCITKSGEVVNYQAFTNSKGVYTVAETMPESERWD 94


>At2g34150.1 68415.m04180 expressed protein
          Length = 700

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +2

Query: 497 DSNVHKS*WGVCVAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTW 667
           D  +H+  W      S   +     FSN L  +  +Q +QE+   E S D  S  TW
Sbjct: 308 DELIHQDPWAASEISSGTHSYSN-GFSNPLYDISGIQEHQESEEVESSCDTESIKTW 363


>At5g23690.1 68418.m02777 polynucleotide adenylyltransferase family
           protein low similarity to SP|P13685 Poly(A) polymerase
           (EC 2.7.7.19) {Escherichia coli O157:H7}; contains Pfam
           profile PF01743: polyA polymerase family protein
          Length = 527

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -1

Query: 344 RMNNKPGNRLWYQLNQK*LLLSMKTGMKHWSQWLHGLK 231
           +++++P +R W QLN K L LS     K   + L+GLK
Sbjct: 54  KVSDEPRDREWKQLNSKDLGLSSSMIAKSTRKVLNGLK 91


>At4g26490.1 68417.m03812 expressed protein 
          Length = 200

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +3

Query: 621 RGSRNAAWIWLVKAPGVKRPAIXVXPVCAANFST 722
           R SR + WIW V      RP I V  +  AN  T
Sbjct: 29  RSSRTSLWIWCVAVFLAIRPRIPVFDIPNANLHT 62


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,503,421
Number of Sequences: 28952
Number of extensions: 335110
Number of successful extensions: 816
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)