Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_J04
         (803 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical p...    56   4e-08

>U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical
           protein F13H8.7 protein.
          Length = 387

 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 41/151 (27%), Positives = 47/151 (31%)
 Frame = -3

Query: 768 KXXXPGVGDFXDPXXKXEXNPGHPXFGXKXGXXPXXXCXGGXXVLXWXXFGQXXXXXVFX 589
           K   P VGDF +     E   GHP F  K G      C G      W  +       +F 
Sbjct: 198 KNHIPRVGDFNESTYYMESTLGHPVFETKYGRIGINICYGRHHPQNWMMYALNGAEIIFN 257

Query: 588 PSTXXPGEXGXE*XWDLEXREAXIXKWXFXXXXXRXG*XXXPKXXNXXXGXXXXKKLGXF 409
           PS    G    E  W +E R A I    F     R G    P       G    K  G F
Sbjct: 258 PSATV-GALS-EPLWGIEARNAAIANHVFTVGINRVGTEVFPNEFTSGNGQPAHKDFGHF 315

Query: 408 XGXX*FXGPXGXXXPXXXXXKXGXXIXAXEL 316
            G      P G   P     + G  I   +L
Sbjct: 316 YGSSYIAAPDGSRTPALSRVREGVLIAELDL 346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,853,558
Number of Sequences: 27780
Number of extensions: 32282
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)