Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_J04
         (803 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64370.1 68418.m08086 beta-ureidopropionase, putative / beta-...    64   8e-11

>At5g64370.1 68418.m08086 beta-ureidopropionase, putative /
           beta-alanine synthase, putative similar to beta-alanine
           synthase [Dictyostelium discoideum] GI:14334061;
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 408

 Score = 64.5 bits (150), Expect = 8e-11
 Identities = 46/153 (30%), Positives = 50/153 (32%)
 Frame = -3

Query: 774 HXKXXXPGVGDFXDPXXKXEXNPGHPXFGXKXGXXPXXXCXGGXXVLXWXXFGQXXXXXV 595
           H K   P VGDF +     E + GHP F    G      C G    L W  FG      V
Sbjct: 210 HRKNHIPRVGDFNESTYYMEGDTGHPVFETVFGKIAVNICYGRHHPLNWLAFGLNGAEIV 269

Query: 594 FXPSTXXPGEXGXE*XWDLEXREAXIXKWXFXXXXXRXG*XXXPKXXNXXXGXXXXKKLG 415
           F PS    GE   E  W +E R A I    F     R G    P       G       G
Sbjct: 270 FNPSATV-GELS-EPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHNDFG 327

Query: 414 XFXGXX*FXGPXGXXXPXXXXXKXGXXIXAXEL 316
            F G   F  P     P     K G  I   +L
Sbjct: 328 HFYGSSHFSAPDASCTPSLSRYKDGLLISDMDL 360


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,639,445
Number of Sequences: 28952
Number of extensions: 28432
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)