Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_I23
         (837 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   1.3  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    22   5.2  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    22   5.2  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   5.2  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   9.1  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = -2

Query: 383 PPVHRKPKSSKEHDKTPRGKSQSPG----RTRDVSVEKETVKASDKSQVDAAE 237
           PP       SK+++K+P  + +SP      T+D +   E+   S  S ++A E
Sbjct: 681 PPESPTRDKSKQNEKSPSPQQRSPSVTDLSTKDGTTVPESNNGSSPSVLNAIE 733


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 440 SXLHAPLRTATPAAPGEGKPPVHRKPKSSKEH 345
           S +H PL   T     EG+  + ++PK  K +
Sbjct: 241 SPVHEPLLITTEKLAAEGQTKLPQQPKLFKPY 272


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 337 VLSCSLDDFGFLCTG 381
           ++  +LDDF  LCTG
Sbjct: 404 IVDITLDDFRGLCTG 418


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -2

Query: 434 LHAPLRTATPAAPGEGKPPVHRKPKSSKEH 345
           LHA     +P A   G PP    P+S + +
Sbjct: 256 LHATGSAPSPTAGAGGLPPQVPSPRSQRRY 285


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 15/59 (25%), Positives = 22/59 (37%)
 Frame = -2

Query: 371 RKPKSSKEHDKTPRGKSQSPGRTRDVSVEKETVKASDKSQVDAAEVTQKLEALQVHNGD 195
           RK  SS         KS SPG       +++       S  ++ E     + LQ +N D
Sbjct: 64  RKSPSSPRISSPSSTKSGSPGFLTYTKADRDVDLFRGSSTPESPEHYYNQKTLQANNND 122


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,898
Number of Sequences: 336
Number of extensions: 1359
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23036718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)