Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_I23
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo...    28   1.4  
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    28   1.9  
SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M...    27   2.5  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    27   3.3  
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|...    26   5.8  

>SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 360

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +2

Query: 5   FFFFSPACCQACL----ARFVSRQVSFQAPVPSPVLFRLSG 115
           F FFS A CQ  L    +  VS  +SF A +P+  +F + G
Sbjct: 8   FLFFSVALCQPLLFQKRSSNVSDFISFNASLPNVTIFAMGG 48


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 22/61 (36%), Positives = 28/61 (45%)
 Frame = -2

Query: 419 RTATPAAPGEGKPPVHRKPKSSKEHDKTPRGKSQSPGRTRDVSVEKETVKASDKSQVDAA 240
           RTA P  P E K P    PKS K    T   K       +   V ++T+K +DKSQ +  
Sbjct: 146 RTARPKKP-EAKEP---SPKSRK----TDEDKHDKDSNEKIEDVNEKTIKFADKSQEEFN 197

Query: 239 E 237
           E
Sbjct: 198 E 198


>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 360

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +2

Query: 5   FFFFSPACCQACL----ARFVSRQVSFQAPVPSPVLFRLSG 115
           F FFS A CQ  L    +  +S  +SF A +P+  +F + G
Sbjct: 8   FLFFSVALCQPFLFQKRSSNISDFISFNASLPNVTIFAMGG 48


>SPCC1795.08c |||histone acetyltransferase complex subunit
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 436  PCTRRSAPRLQPRPARASLRCTESQSH 356
            P   R  PRLQP    +SL+ T  Q H
Sbjct: 943  PIAGRMVPRLQPYAVSSSLKLTPEQIH 969


>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = -2

Query: 371 RKPKSSKEHDKTPRGKSQSPGRTRDVSVEKETVKASDKSQVDAAEVTQK 225
           R+ +S++   K  + K++   + +D   E++TV  SDK+Q+D  E  QK
Sbjct: 259 RRRRSAQNSAKLEKEKAKE--KQKDKDQEQDTV--SDKNQIDEIEKGQK 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,711,227
Number of Sequences: 5004
Number of extensions: 22170
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)