Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_I23
         (837 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27100.1 68414.m03303 expressed protein  contains Pfam profil...    29   2.9  
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t...    29   3.8  
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t...    29   3.8  
At2g30620.1 68415.m03731 histone H1.2 nearly identical to SP|P26...    29   5.1  
At4g39320.1 68417.m05567 microtubule-associated protein-related ...    28   6.7  
At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal hydrolase-r...    28   8.8  
At3g17750.1 68416.m02265 protein kinase family protein contains ...    28   8.8  

>At1g27100.1 68414.m03303 expressed protein  contains Pfam profile:
           PF04601 protein of unknown function (DUF569
          Length = 519

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 416 TATPAAPGEGKPPVHRKPKSSKEHDKTPRGKSQSPGRTRDVSVE 285
           +A    P    PP HR+P SS    ++PR  S    R+   SVE
Sbjct: 385 SAKAPPPKTTSPPPHRRPTSSPLSAESPRTSSSLSDRSDSDSVE 428


>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -2

Query: 428 APLRTATPAAPGEGKPPVHRKPKSSKEHDKTPRGKSQSP 312
           +P    +P+ P    PP H    S+  H  TP   S +P
Sbjct: 60  SPPYDPSPSTPSHPSPPSHTPTPSTPSHTPTPHTPSHTP 98


>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -2

Query: 428 APLRTATPAAPGEGKPPVHRKPKSSKEHDKTPRGKSQSP 312
           +P    +P+ P    PP H    S+  H  TP   S +P
Sbjct: 60  SPPYDPSPSTPSHPSPPSHTPTPSTPSHTPTPHTPSHTP 98


>At2g30620.1 68415.m03731 histone H1.2 nearly identical to SP|P26569
           Histone H1.2 {Arabidopsis thaliana}
          Length = 273

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = -2

Query: 416 TATPAAPGEGKPPVHRKPKSSKEHDKTP-RGKSQSPGRTRDVS--VEKETVKASDKSQVD 246
           T  PAAP + K  V  KPK        P + K+ + G  +  +  V K  V A  K++V 
Sbjct: 136 TPKPAAPVKKKATVVAKPKGKVAAAVAPAKAKAAAKGTKKPAAKVVAKAKVTAKPKAKVT 195

Query: 245 AAEVTQK 225
           AA+   K
Sbjct: 196 AAKPKSK 202


>At4g39320.1 68417.m05567 microtubule-associated protein-related
           contains weak similarity to microtubule-associated
           protein 1B (MAP 1B) (Swiss-Prot:P46821) [Homo sapiens]
          Length = 166

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -2

Query: 386 KPPVHRKPKSSKEHDKTPRGKSQSPGRTRDVSVEKETVKASDKSQVDAAEVTQKLEAL 213
           K PV    K++ E + TP  +++SP      SV ++   A  K   +   VT+ L+ +
Sbjct: 61  KIPVTDDLKTALEEENTPTKEAKSPATETKYSVTEKRAPADKKITPEMMPVTEDLKTV 118


>At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1132

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = -2

Query: 386 KPPVHRKPKSSKEHDKTPRGKSQSPGRTRDVSVEKETVKASDKSQVDAAEVTQKLEALQV 207
           KP    KP+S K  D+T +  S S     D +VE +    S   +    +  +  +AL  
Sbjct: 725 KPQSKEKPQSKKRRDRTKKKPSTSISSLLDKTVEHKPESTSPSLRTVEEDSMEPEDALAS 784

Query: 206 HNG 198
             G
Sbjct: 785 ETG 787


>At3g17750.1 68416.m02265 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain
          Length = 1138

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -2

Query: 365 PKSSKE--HDKTPRGKSQSPGRTRDVSVEKETVKASDKSQVDAAEVTQKLEALQVHN 201
           P+SSK+  H+K P     +     DV    E ++    SQV   +  +  ++L+V N
Sbjct: 158 PRSSKQSSHEKVPEPGKSNKVVVEDVFSSFEKIRTGSSSQVSQYDHGKACQSLEVDN 214


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,686,149
Number of Sequences: 28952
Number of extensions: 138534
Number of successful extensions: 652
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1931371200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)