Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_I22
         (820 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_1032 - 13546130-13547557                                         32   0.48 
03_02_1030 - 13536511-13537929                                         29   4.4  
01_06_0581 - 30386018-30386440                                         29   4.4  
07_01_0504 + 3756714-3757054,3757205-3757259,3757403-3757477,375...    29   5.9  
06_03_1178 + 28203466-28204590,28204745-28205652,28206189-28206258     28   7.8  
04_04_0528 + 25986862-25987938,25988025-25988965,25989071-25989140     28   7.8  
04_01_0282 - 3764110-3764666,3765117-3765180                           28   7.8  

>03_02_1032 - 13546130-13547557
          Length = 475

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -3

Query: 689 PXRVQSQDPXRGGSSPWQMFQMSFPETRPGTRAG 588
           P R  S    RGG +PWQ     FP   PG+  G
Sbjct: 215 PPRPSSSSSSRGGITPWQFKDAIFPSQMPGSFHG 248


>03_02_1030 - 13536511-13537929
          Length = 472

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -3

Query: 689 PXRVQSQDPXRGGSSPWQMFQMSFPETRP 603
           P R  S    RGG +PWQ     FP   P
Sbjct: 212 PPRPSSSSSSRGGITPWQFKDAIFPSQMP 240


>01_06_0581 - 30386018-30386440
          Length = 140

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 271 SGVRSQVLERLEMRLRSGGGGARRQ 345
           SG+  +V +R+E   R GGGG RR+
Sbjct: 31  SGIEVKVRKRVEKEARMGGGGRRRR 55


>07_01_0504 +
           3756714-3757054,3757205-3757259,3757403-3757477,
           3757638-3757729,3757914-3757995,3758138-3758221,
           3758326-3758445
          Length = 282

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +3

Query: 513 WSTGGRQGSRXEQKQGAPWXTRRPGASACAG 605
           WS GG  G R      APW  R  G +   G
Sbjct: 33  WSNGGGGGGRLVAPPSAPWPARARGKNRSGG 63


>06_03_1178 + 28203466-28204590,28204745-28205652,28206189-28206258
          Length = 700

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 680 VQSQDPXRGGSSPWQMFQMSFPE 612
           VQ  DP R  +SPW++ Q+S+ E
Sbjct: 358 VQVADPIRWPNSPWRLLQVSWDE 380


>04_04_0528 + 25986862-25987938,25988025-25988965,25989071-25989140
          Length = 695

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 680 VQSQDPXRGGSSPWQMFQMSFPE 612
           VQ+ DP R   SPW++ Q+++ E
Sbjct: 342 VQASDPVRWPQSPWRLLQVTWDE 364


>04_01_0282 - 3764110-3764666,3765117-3765180
          Length = 206

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 565 HGEHGARAPARVPGRVSGK-DIWNICHGELPPRXGSWLCT 681
           HG HGAR P+ V     GK  + ++     PP  G W+ T
Sbjct: 21  HGHHGARLPSSVERGGRGKAALLSLPISAAPPPPGRWVET 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,307,924
Number of Sequences: 37544
Number of extensions: 249146
Number of successful extensions: 919
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)