Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_I22
         (820 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   1.1  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    24   1.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   1.9  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   5.9  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 314 SLISNLSNTCDLTPLPEWSCEQSAWWGACGRVL 216
           SL +N   +  LTP P W+  ++   GACG  +
Sbjct: 98  SLDTNRGGSPKLTPYPNWAQNKA---GACGSAI 127


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 13/43 (30%), Positives = 16/43 (37%)
 Frame = +2

Query: 560 STMXNTAPGRQRVCRGASPGKTFGTFATGSFHXXXXXXSAPAL 688
           STM N  P R   C  +   KT       S+       SAP +
Sbjct: 309 STMLNENPARVMACMRSVDAKTISVQQWNSYWGILGFPSAPTI 351


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 13/43 (30%), Positives = 16/43 (37%)
 Frame = +2

Query: 560 STMXNTAPGRQRVCRGASPGKTFGTFATGSFHXXXXXXSAPAL 688
           STM N  P R   C  +   KT       S+       SAP +
Sbjct: 309 STMLNENPARVMACMRSVDAKTISVQQWNSYWGILGFPSAPTI 351


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 534 LAARQ*TTTSCGFSVH 487
           LAAR+ T++SC +  H
Sbjct: 331 LAAREITSSSCSYMAH 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,792
Number of Sequences: 438
Number of extensions: 1818
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)