Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_I18
         (801 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi...   180   1e-45
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi...   179   2e-45
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi...   179   2e-45
At3g60400.1 68416.m06755 mitochondrial transcription termination...    29   3.6  
At1g77420.1 68414.m09016 hydrolase, alpha/beta fold family prote...    29   4.7  
At5g22400.1 68418.m02613 rac GTPase activating protein, putative...    28   8.3  

>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
           to ribosomal protein GI:806279 from [Arabidopsis
           thaliana]
          Length = 390

 Score =  180 bits (437), Expect = 1e-45
 Identities = 86/150 (57%), Positives = 105/150 (70%)
 Frame = -2

Query: 728 IEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLR 549
           I  KV +A    EK +PVD++F +DEMID I            +RW   +LPRKTH+GLR
Sbjct: 191 IAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLR 250

Query: 548 KVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDL 369
           KVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+YR+G     K G+   ++A TEYD 
Sbjct: 251 KVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRVG-----KVGQE-THSAMTEYDR 304

Query: 368 SEKSITPMGGFPHYGEVNNDFVMXQGLLHG 279
           +EK ITPMGGFPHYG V  D++M +G   G
Sbjct: 305 TEKDITPMGGFPHYGIVKEDYLMIKGCCVG 334



 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 37/61 (60%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
 Frame = -3

Query: 295 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMG-TL 119
           KGCC+GPKKR++TLR++L   T R A+E+I LKFID +S  GHGRFQT  +KA F G T+
Sbjct: 329 KGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGRTI 388

Query: 118 K 116
           K
Sbjct: 389 K 389


>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  179 bits (436), Expect = 2e-45
 Identities = 86/151 (56%), Positives = 105/151 (69%)
 Frame = -2

Query: 731 TIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGL 552
           TI  KV +A    EK IP+++VF +DEMID I            +RW   +LPRKTH+GL
Sbjct: 190 TIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL 249

Query: 551 RKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYD 372
           RKVACIGAWHP+RVS+TVARAGQ GYHHRTE+NKKIYR+G     K G    + A TEYD
Sbjct: 250 RKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLG-----KVG-TEAHTAMTEYD 303

Query: 371 LSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 279
            +EK +TPMGGFPHYG V +D++M +G   G
Sbjct: 304 RTEKDVTPMGGFPHYGIVKDDYLMIKGCCVG 334



 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 38/61 (62%), Positives = 46/61 (75%)
 Frame = -3

Query: 295 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 116
           KGCC+GPKKR++TLR+SL   T R ALE+I LKFIDT+S FGHGRFQT  +K  F   + 
Sbjct: 329 KGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVT 388

Query: 115 K 113
           K
Sbjct: 389 K 389


>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  179 bits (436), Expect = 2e-45
 Identities = 86/151 (56%), Positives = 105/151 (69%)
 Frame = -2

Query: 731 TIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGL 552
           TI  KV +A    EK IP+++VF +DEMID I            +RW   +LPRKTH+GL
Sbjct: 190 TIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL 249

Query: 551 RKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYD 372
           RKVACIGAWHP+RVS+TVARAGQ GYHHRTE+NKKIYR+G     K G    + A TEYD
Sbjct: 250 RKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLG-----KVG-TEAHTAMTEYD 303

Query: 371 LSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 279
            +EK +TPMGGFPHYG V +D++M +G   G
Sbjct: 304 RTEKDVTPMGGFPHYGIVKDDYLMIKGCCVG 334



 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 38/61 (62%), Positives = 46/61 (75%)
 Frame = -3

Query: 295 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 116
           KGCC+GPKKR++TLR+SL   T R ALE+I LKFIDT+S FGHGRFQT  +K  F   + 
Sbjct: 329 KGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVT 388

Query: 115 K 113
           K
Sbjct: 389 K 389


>At3g60400.1 68416.m06755 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 558

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -2

Query: 476 YHHRTEMNKKIYRIGQGIHKKDGK--VIKNNASTEYDLSEKSITPMGGFPHYG 324
           Y     MNK  Y    G+ K+D    +++N A   +DL +  I+  G   H+G
Sbjct: 262 YSEEALMNKAGYFCRFGVSKEDAALLILRNPAIMNFDLEKPVISVTGMLKHFG 314


>At1g77420.1 68414.m09016 hydrolase, alpha/beta fold family protein
           similar to monoglyceride lipase from [Homo sapiens]
           GI:14594904, [Mus musculus] GI:2632162; contains Pfam
           profile PF00561: hydrolase, alpha/beta fold family
          Length = 382

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +3

Query: 657 LGKHRIDRDRFLQMFSGPFHFVLDG 731
           L KH + +D+ L+++ G +H +L+G
Sbjct: 334 LHKHAVSQDKTLKLYPGGYHCILEG 358


>At5g22400.1 68418.m02613 rac GTPase activating protein, putative
           similar to rac GTPase activating protein 1 [Lotus
           japonicus] GI:3695059; contains Pfam profile PF00620:
           RhoGAP domain
          Length = 466

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -1

Query: 207 STSNSLTPRPSSVMVDSRRRLTRLHSWVHSRR 112
           S+S+S +P PSS+   SR   T L S  H+RR
Sbjct: 17  SSSSSSSPSPSSLSYASRSNATLLISSDHNRR 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,474,301
Number of Sequences: 28952
Number of extensions: 370380
Number of successful extensions: 907
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)