Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_I17
(801 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 155 2e-36
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 153 5e-36
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 122 8e-27
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 105 1e-21
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 103 4e-21
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 98 2e-19
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 93 6e-18
UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep: ... 85 2e-15
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 73 6e-12
UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S riboso... 66 1e-09
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 64 3e-09
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 61 3e-08
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 58 3e-07
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 55 2e-06
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 54 6e-06
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 52 1e-05
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 52 1e-05
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 50 5e-05
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 49 2e-04
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 48 4e-04
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 47 5e-04
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 44 0.006
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 44 0.006
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 44 0.006
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 40 0.073
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 155 bits (375), Expect = 2e-36
Identities = 97/236 (41%), Positives = 124/236 (52%)
Frame = -2
Query: 800 TQMKLLKQGQKKAHIMESXXTGVPXXTK*NGPENILEKPIPVDSVFAXR*ND*LHWCHQG 621
TQM+LL QKKAH+ME G K + LE+ +PV+ VF + +G
Sbjct: 166 TQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKG 225
Query: 620 QKDTKVSLLVGTQRSYPVRHTRVLGKLPALELGILXGCRSXXXXXXXXXXXXXLKWTRKS 441
+ V+ T++ P + R L K+ + + +K
Sbjct: 226 KGYKGVTSRWHTKK-LPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKI 284
Query: 440 IVLXQGIHXKDGXVIXNXAFTEYXLFEKSITPMGGFPHYGEVNXDFVMXKGCCMGPXKRV 261
+ QG KDG +I N A T+Y L +KSI P+GGF HYGEV DFVM KGC +G KRV
Sbjct: 285 YKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRV 344
Query: 260 IXFRKXLXVHTKRAAXEKINLKFIDIXSKFGHGRFQTPADKAAXMGTXKKDCIXEE 93
+ RK L V TKR A EKI+LKFID SKFGHGRFQT +K A MG KKD I +E
Sbjct: 345 LTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKE 400
Score = 134 bits (325), Expect = 2e-30
Identities = 62/102 (60%), Positives = 76/102 (74%)
Frame = -1
Query: 735 GTXXDKVKWAREHSGETYPCRFCVCPKMK*LTALVSPRAKGYXGVTSRWHTKKLPRKTHK 556
GT +K+ WARE + P V + + + + + KGY GVTSRWHTKKLPRKTH+
Sbjct: 188 GTVAEKLDWARERLEQQVPVNQ-VFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHR 246
Query: 555 GXRKVACIGAWHPXRVSFTVARAGQKGYXHRTEMDKKIYRIG 430
G RKVACIGAWHP RV+F+VARAGQKGY HRTE++KKIY+IG
Sbjct: 247 GLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIG 288
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 153 bits (371), Expect = 5e-36
Identities = 96/230 (41%), Positives = 119/230 (51%)
Frame = -2
Query: 800 TQMKLLKQGQKKAHIMESXXTGVPXXTK*NGPENILEKPIPVDSVFAXR*ND*LHWCHQG 621
TQMKLL QKKAHIME G K + LEK +PV SVF+ + +G
Sbjct: 166 TQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKG 225
Query: 620 QKDTKVSLLVGTQRSYPVRHTRVLGKLPALELGILXGCRSXXXXXXXXXXXXXLKWTRKS 441
+ V+ T++ P + + L K+ + + +K
Sbjct: 226 RGVKGVTSRWHTKK-LPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKI 284
Query: 440 IVLXQGIHXKDGXVIXNXAFTEYXLFEKSITPMGGFPHYGEVNXDFVMXKGCCMGPXKRV 261
+ +G H +DG ++ N A T Y + KSITP+GGFPHYGEVN DFVM KGC G KRV
Sbjct: 285 FRIGRGPHMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRV 344
Query: 260 IXFRKXLXVHTKRAAXEKINLKFIDIXSKFGHGRFQTPADKAAXMGTXKK 111
I RK L VH R A E I LKFID SKFGHGRFQT +K A MG KK
Sbjct: 345 ITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQKK 394
Score = 128 bits (308), Expect = 2e-28
Identities = 60/106 (56%), Positives = 74/106 (69%)
Frame = -1
Query: 735 GTXXDKVKWAREHSGETYPCRFCVCPKMK*LTALVSPRAKGYXGVTSRWHTKKLPRKTHK 556
GT +KV WA+ + P V + + + + + +G GVTSRWHTKKLPRKTHK
Sbjct: 188 GTVAEKVAWAQARLEKQVPVH-SVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPRKTHK 246
Query: 555 GXRKVACIGAWHPXRVSFTVARAGQKGYXHRTEMDKKIYRIGXRNP 418
G RKVACIGAWHP RV ++ARAGQKGY HRTE++KKI+RIG R P
Sbjct: 247 GLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIG-RGP 291
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 122 bits (295), Expect = 8e-27
Identities = 57/99 (57%), Positives = 69/99 (69%)
Frame = -2
Query: 392 NXAFTEYXLFEKSITPMGGFPHYGEVNXDFVMXKGCCMGPXKRVIXFRKXLXVHTKRAAX 213
N TE+ L +K+ITPMGGFP YG VN D++M +G +GP KR+I RK L TKR A
Sbjct: 250 NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAH 309
Query: 212 EKINLKFIDIXSKFGHGRFQTPADKAAXMGTXKKDCIXE 96
EKINLK+ID SK GHGRFQT A+K A MG K+D + E
Sbjct: 310 EKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 348
Score = 120 bits (290), Expect = 3e-26
Identities = 52/65 (80%), Positives = 57/65 (87%)
Frame = -1
Query: 624 RAKGYXGVTSRWHTKKLPRKTHKGXRKVACIGAWHPXRVSFTVARAGQKGYXHRTEMDKK 445
R G+ GVTSRWHTKKLPRKTHKG RKVACIGAWHP RV+FTVARAGQKG+ HRT ++ K
Sbjct: 176 RGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNK 235
Query: 444 IYRIG 430
IYRIG
Sbjct: 236 IYRIG 240
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 105 bits (252), Expect = 1e-21
Identities = 53/100 (53%), Positives = 60/100 (60%)
Frame = -2
Query: 392 NXAFTEYXLFEKSITPMGGFPHYGEVNXDFVMXKGCCMGPXKRVIXFRKXLXVHTKRAAX 213
N A T Y L K+ITPMGGF YG V D+VM KG GP +RVI R+ + T R
Sbjct: 350 NQATTAYDLTAKTITPMGGFVGYGTVRNDYVMLKGSVAGPRRRVITLRRPMAPQTSRKLT 409
Query: 212 EKINLKFIDIXSKFGHGRFQTPADKAAXMGTXKKDCIXEE 93
EKI LKFID SK GHGRFQT +K+ G KKD I E
Sbjct: 410 EKITLKFIDTSSKIGHGRFQTKKEKSQWYGPLKKDRIRRE 449
Score = 101 bits (242), Expect = 2e-20
Identities = 42/65 (64%), Positives = 50/65 (76%)
Frame = -1
Query: 624 RAKGYXGVTSRWHTKKLPRKTHKGXRKVACIGAWHPXRVSFTVARAGQKGYXHRTEMDKK 445
+ G+ GV RW LPRKTH+G RKVACIGAWHP RV +TVARAGQ GY HRT ++KK
Sbjct: 278 KGHGFTGVVKRWGVACLPRKTHRGLRKVACIGAWHPSRVMYTVARAGQHGYHHRTHLNKK 337
Query: 444 IYRIG 430
IY++G
Sbjct: 338 IYQLG 342
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 103 bits (248), Expect = 4e-21
Identities = 53/114 (46%), Positives = 68/114 (59%)
Frame = -2
Query: 449 RKSIVLXQGIHXKDGXVIXNXAFTEYXLFEKSITPMGGFPHYGEVNXDFVMXKGCCMGPX 270
+K + QG K+G +I N A T+Y KSI+P+GG H G+V DFVM K C +G
Sbjct: 230 KKIYKIGQGYLIKNGKIIKNNASTDYT---KSISPLGGCIHCGKVTNDFVMLKDCLVGTK 286
Query: 269 KRVIXFRKXLXVHTKRAAXEKINLKFIDIXSKFGHGRFQTPADKAAXMGTXKKD 108
KRV+ K L + TK+ +K+N KFID SKFGHG FQ +K MG KKD
Sbjct: 287 KRVLSLCKSLLMRTKQQTLQKVNFKFIDTTSKFGHGCFQIVGEKKGFMGPLKKD 340
Score = 58.4 bits (135), Expect = 2e-07
Identities = 35/97 (36%), Positives = 54/97 (55%)
Frame = -1
Query: 720 KVKWAREHSGETYPCRFCVCPKMK*LTALVSPRAKGYXGVTSRWHTKKLPRKTHKGXRKV 541
K+ WA + + P +++ L + + + K Y G++S W+TKK+P KTH+ +
Sbjct: 149 KLDWAHKKLEQQVPVNHIF--RVRRLFVIGTTKGKHYKGISSHWYTKKVPWKTHQEFHEA 206
Query: 540 ACIGAWHPXRVSFTVARAGQKGYXHRTEMDKKIYRIG 430
ACI W +VA A QKG H T ++KKIY+IG
Sbjct: 207 ACI--WD----GLSVAWARQKGCHHCT-INKKIYKIG 236
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 98.3 bits (234), Expect = 2e-19
Identities = 54/119 (45%), Positives = 68/119 (57%)
Frame = -2
Query: 449 RKSIVLXQGIHXKDGXVIXNXAFTEYXLFEKSITPMGGFPHYGEVNXDFVMXKGCCMGPX 270
+K + QG KDG +I N A TEY L +KSI +GGF HYGEV DF+ KGC +
Sbjct: 260 KKICKIGQGYLIKDGKLIKNNAPTEYHLSDKSINLLGGFVHYGEVTNDFIRLKGCAV-RT 318
Query: 269 KRVIXFRKXLXVHTKRAAXEKINLKFIDIXSKFGHGRFQTPADKAAXMGTXKKDCIXEE 93
K+ + K L V T + A +KI+ K D K GHG FQT K A +G KK+C EE
Sbjct: 319 KKHLTICKYLLVQTIQWALKKIDPKLNDTTYKVGHGCFQTTEGKRAFIGPLKKECTAEE 377
Score = 62.5 bits (145), Expect = 1e-08
Identities = 30/65 (46%), Positives = 42/65 (64%)
Frame = -1
Query: 624 RAKGYXGVTSRWHTKKLPRKTHKGXRKVACIGAWHPXRVSFTVARAGQKGYXHRTEMDKK 445
+ GY GVT + P + +G K+ C+GAWHP RV+F+VA+ GQKGY H + +KK
Sbjct: 204 KGNGYKGVTRVDIQRNCPERPIEGCPKL-CVGAWHPARVTFSVAQVGQKGYHHNGD-NKK 261
Query: 444 IYRIG 430
I +IG
Sbjct: 262 ICKIG 266
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 93.5 bits (222), Expect = 6e-18
Identities = 41/72 (56%), Positives = 52/72 (72%)
Frame = -1
Query: 645 LTALVSPRAKGYXGVTSRWHTKKLPRKTHKGXRKVACIGAWHPXRVSFTVARAGQKGYXH 466
+ A+ + G GV SRW +LPRKTH+G RKVACIG W P RV++T++RAGQKGY
Sbjct: 199 IDAIGITKGHGTKGVVSRWGITRLPRKTHRGLRKVACIGPWTPSRVAWTISRAGQKGYHK 258
Query: 465 RTEMDKKIYRIG 430
RT +KKIY+IG
Sbjct: 259 RTLFNKKIYKIG 270
Score = 69.7 bits (163), Expect = 8e-11
Identities = 33/78 (42%), Positives = 46/78 (58%)
Frame = -2
Query: 359 KSITPMGGFPHYGEVNXDFVMXKGCCMGPXKRVIXFRKXLXVHTKRAAXEKINLKFIDIX 180
KS+ MGGF +G +N D+++ KG G KR I RK + EKI LK++D
Sbjct: 288 KSVNCMGGFKKFGFINNDYLIIKGSMTGSSKRPILLRKNIKNKISSVITEKIILKYVDTS 347
Query: 179 SKFGHGRFQTPADKAAXM 126
SK GHGR+++ ADK + M
Sbjct: 348 SKRGHGRYESSADKFSKM 365
>UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep:
Ribosomal protein L3 - Mus musculus (Mouse)
Length = 67
Score = 85.0 bits (201), Expect = 2e-15
Identities = 39/67 (58%), Positives = 46/67 (68%)
Frame = -2
Query: 407 GXVIXNXAFTEYXLFEKSITPMGGFPHYGEVNXDFVMXKGCCMGPXKRVIXFRKXLXVHT 228
G +I N A T+Y L +KSI P+GGF HYGEV DF+M KGC +G KRV+ RK L V T
Sbjct: 1 GKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQT 60
Query: 227 KRAAXEK 207
KR A EK
Sbjct: 61 KRRALEK 67
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 73.3 bits (172), Expect = 6e-12
Identities = 34/78 (43%), Positives = 42/78 (53%)
Frame = -1
Query: 645 LTALVSPRAKGYXGVTSRWHTKKLPRKTHKGXRKVACIGAWHPXRVSFTVARAGQKGYXH 466
L + + KG G RW K K KG RKV IG WHP RV +TV AGQ G+ H
Sbjct: 219 LDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHH 278
Query: 465 RTEMDKKIYRIGXRNPXK 412
RTE++K++ IG K
Sbjct: 279 RTELNKRLIAIGENGKLK 296
Score = 53.2 bits (122), Expect = 7e-06
Identities = 24/63 (38%), Positives = 34/63 (53%)
Frame = -2
Query: 362 EKSITPMGGFPHYGEVNXDFVMXKGCCMGPXKRVIXFRKXLXVHTKRAAXEKINLKFIDI 183
E ITP GGFPHYG V DF+M G G KR+I R + K+ ++ + ++ +
Sbjct: 302 EIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSV 361
Query: 182 XSK 174
SK
Sbjct: 362 ESK 364
>UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S ribosomal
protein L3 (L4); n=1; Macaca mulatta|Rep: PREDICTED:
similar to 60S ribosomal protein L3 (L4) - Macaca
mulatta
Length = 153
Score = 65.7 bits (153), Expect = 1e-09
Identities = 34/63 (53%), Positives = 40/63 (63%)
Frame = -2
Query: 281 MGPXKRVIXFRKXLXVHTKRAAXEKINLKFIDIXSKFGHGRFQTPADKAAXMGTXKKDCI 102
+G K+V+ K V TK A EKI+LKFID SKFGHGRFQT +K A MG KKD
Sbjct: 88 VGTKKQVLTLCKSSLVQTKWRALEKIDLKFIDTTSKFGHGRFQTIGEKKAFMGPLKKDQT 147
Query: 101 XEE 93
+E
Sbjct: 148 AKE 150
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 64.5 bits (150), Expect = 3e-09
Identities = 33/77 (42%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = -1
Query: 624 RAKGYXGVTSRWHTKKLPRKTHKGXRKVACIGAWHPXRVSFTVARAGQKGYXHRTEMDKK 445
+ KG+ GV R+H + K+ KG RKV IG+ P R+ TV GQ GY RTE +K
Sbjct: 196 KGKGFQGVIKRFHVHRRQHKSEKGVRKVGAIGSRGPGRIFPTVPMPGQMGYHRRTEYNKL 255
Query: 444 IYRIG-XRNPXKGWXSY 397
I +IG N GW Y
Sbjct: 256 IIKIGEPLNVEGGWVRY 272
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 61.3 bits (142), Expect = 3e-08
Identities = 29/71 (40%), Positives = 40/71 (56%)
Frame = -1
Query: 624 RAKGYXGVTSRWHTKKLPRKTHKGXRKVACIGAWHPXRVSFTVARAGQKGYXHRTEMDKK 445
+ KG+ GV RW+ KK K+ K R+V +G P V +TV RAGQ G+ R E DK+
Sbjct: 204 KGKGWQGVLKRWNVKKKQHKSRKTVREVGSLGPISPQSVMYTVPRAGQFGFHQRVEYDKR 263
Query: 444 IYRIGXRNPXK 412
I +G + K
Sbjct: 264 IMIMGNTDDDK 274
Score = 38.3 bits (85), Expect = 0.22
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -2
Query: 353 ITPMGGFPHYGEVNXDFVMXKGCCMGPXKRVIXFRKXL 240
I P GGF H+G V DF++ KG G +R+I R +
Sbjct: 277 INPDGGFKHFGLVKGDFIVLKGSVPGAYRRLIKLRSQI 314
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 58.0 bits (134), Expect = 3e-07
Identities = 32/96 (33%), Positives = 48/96 (50%)
Frame = -1
Query: 723 DKVKWAREHSGETYPCRFCVCPKMK*LTALVSPRAKGYXGVTSRWHTKKLPRKTHKGXRK 544
++ ++A H G+T P K + L + KG+ G R+ K LPRK K R
Sbjct: 167 ERFEYATAHLGKTIRFEDFSKPG-KFVDVLSVTKGKGFTGHVQRFGVKLLPRKNRKHRRM 225
Query: 543 VACIGAWHPXRVSFTVARAGQKGYXHRTEMDKKIYR 436
+ +G WHP V TV +AGQ GY RT + ++ +
Sbjct: 226 IGTLGPWHPDWVRNTVPQAGQMGYQQRTISNVRVLK 261
Score = 41.1 bits (92), Expect = 0.032
Identities = 23/63 (36%), Positives = 31/63 (49%)
Frame = -2
Query: 356 SITPMGGFPHYGEVNXDFVMXKGCCMGPXKRVIXFRKXLXVHTKRAAXEKINLKFIDIXS 177
+I GGF HYG V D+V+ G GP KR+I R K + + L +I + S
Sbjct: 270 TINVRGGFLHYGLVKNDYVLLFGSVPGPAKRLIKMRD--PARQKVPDIDNVKLDYISLES 327
Query: 176 KFG 168
K G
Sbjct: 328 KQG 330
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 54.8 bits (126), Expect = 2e-06
Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Frame = -1
Query: 624 RAKGYXGVTSRWHTKKLPRKTHKGX--RKVACIGAWHPXRVSFTVARAGQKGYXHRTEMD 451
+ KG+ GV RW RKT + R + IG P RV +TV AGQ GY RTE +
Sbjct: 209 KGKGFQGVVKRWGVTIQDRKTQRKQKGRHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHN 268
Query: 450 KKIYRIG 430
K+I +IG
Sbjct: 269 KRILKIG 275
Score = 41.5 bits (93), Expect = 0.024
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = -2
Query: 359 KSITPMGGFPHYGEVNXDFVMXKGCCMGPXKRVIXFR 249
+ +TP GGF +YG V D++M G GP KR+I R
Sbjct: 279 EEVTPRGGFVNYGVVRGDYIMIHGTVPGPKKRLIRVR 315
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 53.6 bits (123), Expect = 6e-06
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = -1
Query: 624 RAKGYXGVTSRWHTK-KLPRKTHKGX-RKVACIGAWHPXRVSFTVARAGQKGYXHRTEMD 451
+ KG+ G RW K + + KG R V IG W P V ++V GQ GY RTE +
Sbjct: 203 KGKGFQGQVKRWGVKIQFGKHARKGVGRHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYN 262
Query: 450 KKIYRIG 430
K+I +IG
Sbjct: 263 KRILKIG 269
Score = 45.2 bits (102), Expect = 0.002
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = -2
Query: 353 ITPMGGFPHYGEVNXDFVMXKGCCMGPXKRVIXFRKXL 240
ITP GGF HYG + ++V+ KG GP KR+I R+ +
Sbjct: 275 ITPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIVLRRAI 312
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 52.4 bits (120), Expect = 1e-05
Identities = 34/101 (33%), Positives = 49/101 (48%)
Frame = -1
Query: 735 GTXXDKVKWAREHSGETYPCRFCVCPKMK*LTALVSPRAKGYXGVTSRWHTKKLPRKTHK 556
G K++WA E G V K L + + KG+ GV R+ K L K K
Sbjct: 192 GDTGAKLEWAHERLGGEIGIDD-VYEAGKELDVVGITKGKGWQGVIKRFGVKLLSHKNSK 250
Query: 555 GXRKVACIGAWHPXRVSFTVARAGQKGYXHRTEMDKKIYRI 433
R++ +G + V T+ +AGQ GY RTE++K+I RI
Sbjct: 251 RRRQIGNMGDFGTGYVRKTIRQAGQMGYHKRTELNKRILRI 291
Score = 50.8 bits (116), Expect = 4e-05
Identities = 24/65 (36%), Positives = 36/65 (55%)
Frame = -2
Query: 362 EKSITPMGGFPHYGEVNXDFVMXKGCCMGPXKRVIXFRKXLXVHTKRAAXEKINLKFIDI 183
E +TP GGF HYGEV +++ +G GP KR++ FR + HT ++L ++
Sbjct: 296 ESDVTPAGGFLHYGEVTNPYMVLEGSLPGPAKRLLRFRDPVRPHTN---VFDVDLTYVST 352
Query: 182 XSKFG 168
SK G
Sbjct: 353 SSKQG 357
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 52.4 bits (120), Expect = 1e-05
Identities = 24/65 (36%), Positives = 36/65 (55%)
Frame = -1
Query: 624 RAKGYXGVTSRWHTKKLPRKTHKGXRKVACIGAWHPXRVSFTVARAGQKGYXHRTEMDKK 445
+ KG+ GV R K+ K+ K R++ +G P V +TV RAGQ G+ R E +K+
Sbjct: 202 KGKGWQGVIQRMGAKRKQHKSRKTVRELGSLGPISPQNVMYTVPRAGQMGFHQRIEYNKR 261
Query: 444 IYRIG 430
I +G
Sbjct: 262 IMAVG 266
Score = 39.5 bits (88), Expect = 0.096
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -2
Query: 362 EKSITPMGGFPHYGEVNXDFVMXKGCCMGPXKRVIXFRKXLXVHTKRAAXEKI 204
+ +I P GG+ H+G V D+++ KG G +R++ R + KR + I
Sbjct: 271 DDAINPSGGYKHFGMVKGDYIVLKGSVPGTYRRLVKLRAQIRNAPKRTSKPNI 323
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 50.4 bits (115), Expect = 5e-05
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Frame = -1
Query: 624 RAKGYXGVTSRWHTKKLPRK-THKGXRK-VACIGAWHPXRVSFTVARAGQKGYXHRTEMD 451
+ KG G RW +K K +G R+ + +G W+P RV TV + GQ GY RTE++
Sbjct: 205 KGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELN 264
Query: 450 KKIYRIGXRN---PXKGWXSY 397
K++ I + P G+ +Y
Sbjct: 265 KRLIDINDGDEPTPDGGFPNY 285
Score = 44.0 bits (99), Expect = 0.004
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = -2
Query: 350 TPMGGFPHYGEVNXDFVMXKGCCMGPXKRVIXFR 249
TP GGFP+YGEV+ + + KG GP +R++ FR
Sbjct: 277 TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFR 310
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 48.8 bits (111), Expect = 2e-04
Identities = 23/64 (35%), Positives = 33/64 (51%)
Frame = -2
Query: 359 KSITPMGGFPHYGEVNXDFVMXKGCCMGPXKRVIXFRKXLXVHTKRAAXEKINLKFIDIX 180
+ ITP GGF HYG + D++M KG GP KR++ R V K + + ++
Sbjct: 276 EEITPAGGFLHYGLIRNDYIMLKGSIPGPVKRMVRIRP--AVRPKNMPKQAPEITYLSTQ 333
Query: 179 SKFG 168
SK G
Sbjct: 334 SKMG 337
Score = 48.4 bits (110), Expect = 2e-04
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Frame = -1
Query: 633 VSPRAKGYX--GVTSRWHTKKLPRKTHKGXRK--VACIGAWHPXRVSFTVARAGQKGYXH 466
VS KGY G RW RK + +K V +G W+P R+ + V + GQ GY
Sbjct: 201 VSAITKGYGTQGPVVRWGIATQKRKHARTGKKRHVGNLGPWNPHRIRWQVPQLGQTGYHQ 260
Query: 465 RTEMDKKIYRIGXR 424
RTE +K+I ++G +
Sbjct: 261 RTEYNKRILKMGDK 274
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 47.6 bits (108), Expect = 4e-04
Identities = 24/65 (36%), Positives = 34/65 (52%)
Frame = -2
Query: 362 EKSITPMGGFPHYGEVNXDFVMXKGCCMGPXKRVIXFRKXLXVHTKRAAXEKINLKFIDI 183
E ITP GGF HYGEV +++ +G GP KR+I FR R +++ ++
Sbjct: 276 ESQITPAGGFLHYGEVKNHYMIIQGSLPGPAKRLIRFR---DAARPRREQPPVDITYVST 332
Query: 182 XSKFG 168
SK G
Sbjct: 333 ASKQG 337
Score = 45.6 bits (103), Expect = 0.001
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = -1
Query: 618 KGYX--GVTSRWHTKKLPRKTHKGXRKVACIGAWHPXRVSFTVARAGQKGYXHRTEMDKK 445
KGY GV R+ K L K K R++ +G + V T+ +AGQ GY RTE +K+
Sbjct: 208 KGYGNQGVVRRFGVKLLSHKNSKRRRQIGNMGDFGTGYVRKTIRQAGQTGYHQRTEYNKR 267
Query: 444 IYRI 433
I RI
Sbjct: 268 ILRI 271
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 47.2 bits (107), Expect = 5e-04
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Frame = -1
Query: 624 RAKGYXGVTSRWHTKKLPR--KTHKGXRKVACIGAWHPXRVSF-TVARAGQKGYXHRTEM 454
+ KG+ GV RW K+LPR K KG R+ IGA R +F +AGQ G+ RTE
Sbjct: 210 KGKGFQGVIKRWGVKELPRWHKHRKGSRR---IGARSHGRSTFWETPQAGQTGFHRRTEY 266
Query: 453 DKKIYRI 433
+K+I I
Sbjct: 267 NKRILMI 273
Score = 35.5 bits (78), Expect = 1.6
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = -2
Query: 353 ITPMGGFPHYGEVNXDFVMXKGCCMGPXKRVIXFR 249
+TP GGF YG V FVM G G KR I R
Sbjct: 280 VTPAGGFLRYGVVRSTFVMLSGSIPGTPKRPIVMR 314
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 43.6 bits (98), Expect = 0.006
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Frame = -1
Query: 624 RAKGYXGVTSRWHTKKLPR--KTHKGXRKVACIGAWHPXRVSFTVARAGQKGYXHRTEMD 451
+ KG+ GV R+ K+LP+ K KG R+V +W S+ V + GQ GY RT+ +
Sbjct: 227 KGKGFQGVIKRFGVKELPKWHKHRKGSRRVGA-RSWGKGTSSY-VPQPGQMGYHRRTDYN 284
Query: 450 KKIYRIGXR----NPXKGWXSY 397
K++ I N GW Y
Sbjct: 285 KRVLMISDDPSKINVEGGWLHY 306
Score = 33.9 bits (74), Expect = 4.8
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -2
Query: 341 GGFPHYGEVNXDFVMXKGCCMGPXKRVIXFR 249
GG+ HYG V +V+ KG GP KR I R
Sbjct: 301 GGWLHYGLVKSKYVVLKGSVFGPPKRPIIMR 331
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 43.6 bits (98), Expect = 0.006
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Frame = -1
Query: 777 GXKEGSHYGIXXXXGTXXDKVKWAREHSGETYPCRFCVCPKMK*LTALVSPRAKGYXGVT 598
G K+ I GT +++ +A + G Y V + + + + + KG+ GV
Sbjct: 214 GKKKPEIIEIKIGGGTLSERIDYAEKLLGN-YVTVDQVFREGQFIDIIGVTKGKGFQGVI 272
Query: 597 SRWHTKKLPR--KTHKGXRKVACIGAWHPXRVSFT-VARAGQKGYXHRTEMDKKIYRIG 430
R+ K+LPR K KG RK IG+ P + + + GQ G+ RTE +K+I +IG
Sbjct: 273 KRFGVKELPRWHKHRKGSRK---IGSRSPGFGTMSETPQPGQMGFHRRTEYNKRIIKIG 328
Score = 36.3 bits (80), Expect = 0.90
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -2
Query: 353 ITPMGGFPHYGEVNXDFVMXKGCCMGPXKRVIXFR 249
+TP GGF YG V ++M G +GP KR++ R
Sbjct: 334 VTPKGGFLGYGIVYGPYIMLHGSIIGPRKRLLVLR 368
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 43.6 bits (98), Expect = 0.006
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Frame = -1
Query: 624 RAKGYXGVTSRWHTKKLPR--KTHKGXRKVACIGAWHPXRVSFTVARAGQKGYXHRTEMD 451
+ KG+ GV R+ +LPR K KG RK+ G S+T + GQ G+ RTE +
Sbjct: 222 KGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYN 279
Query: 450 KKIYRIGXR----NPXKGWXSY 397
K+I +IG NP G+ Y
Sbjct: 280 KRIIKIGDEPKEINPAGGFVRY 301
Score = 35.9 bits (79), Expect = 1.2
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2
Query: 359 KSITPMGGFPHYGEVNXDFVMXKGCCMGPXKRVIXFRK 246
K I P GGF YG V +V+ +G +G KR I R+
Sbjct: 290 KEINPAGGFVRYGIVRNTYVLLEGSILGSKKRPIFLRE 327
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 39.9 bits (89), Expect = 0.073
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 359 KSITPMGGFPHYGEVNXDFVMXKGCCMGPXKRVIXFR 249
K I P GG+PHYG V F++ +G G KR++ R
Sbjct: 272 KEINPPGGWPHYGLVRSQFIIVEGSVPGAVKRLVRLR 308
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 641,682,963
Number of Sequences: 1657284
Number of extensions: 10233999
Number of successful extensions: 16497
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 16238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16487
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 68731504465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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