Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_I17
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   120   2e-28
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   120   2e-28
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    25   9.5  
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    25   9.5  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  120 bits (290), Expect = 2e-28
 Identities = 56/108 (51%), Positives = 72/108 (66%)
 Frame = -1

Query: 735 GTXXDKVKWAREHSGETYPCRFCVCPKMK*LTALVSPRAKGYXGVTSRWHTKKLPRKTHK 556
           G+  DKV+WAREH  +T   +     + + +  +   R KG  G T+RW TK+LPRKTH+
Sbjct: 186 GSVADKVEWAREHFEKTVDIK-STFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHR 244

Query: 555 GXRKVACIGAWHPXRVSFTVARAGQKGYXHRTEMDKKIYRIGXRNPXK 412
           G RKVACIGAWHP  V +TVARAG  GY HRT+++ KIYRIG  +  K
Sbjct: 245 GLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292



 Score =  114 bits (275), Expect = 1e-26
 Identities = 79/231 (34%), Positives = 105/231 (45%)
 Frame = -2

Query: 800 TQMKLLKQGQKKAHIMESXXTGVPXXTK*NGPENILEKPIPVDSVFAXR*ND*LHWCHQG 621
           TQ++     QKKAH+ME    G     K        EK + + S F       +    +G
Sbjct: 164 TQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRG 223

Query: 620 QKDTKVSLLVGTQRSYPVRHTRVLGKLPALELGILXGCRSXXXXXXXXXXXXXLKWTRKS 441
           + +   +   GT+R  P +  R L K+  +        +               +   K 
Sbjct: 224 KGNEGTTARWGTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKI 282

Query: 440 IVLXQGIHXKDGXVIXNXAFTEYXLFEKSITPMGGFPHYGEVNXDFVMXKGCCMGPXKRV 261
             +  G   K+       A T++   EK ITPMGGF  YG V  DFVM  G   GP KRV
Sbjct: 283 YRIGAGDDAKN-------ASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRV 335

Query: 260 IXFRKXLXVHTKRAAXEKINLKFIDIXSKFGHGRFQTPADKAAXMGTXKKD 108
           +  RK L  HT R A E ++LK+ID  SKFGHGRFQTPA+    +GT KKD
Sbjct: 336 LTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  120 bits (290), Expect = 2e-28
 Identities = 56/108 (51%), Positives = 72/108 (66%)
 Frame = -1

Query: 735 GTXXDKVKWAREHSGETYPCRFCVCPKMK*LTALVSPRAKGYXGVTSRWHTKKLPRKTHK 556
           G+  DKV+WAREH  +T   +     + + +  +   R KG  G T+RW TK+LPRKTH+
Sbjct: 186 GSVADKVEWAREHFEKTVDIK-STFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHR 244

Query: 555 GXRKVACIGAWHPXRVSFTVARAGQKGYXHRTEMDKKIYRIGXRNPXK 412
           G RKVACIGAWHP  V +TVARAG  GY HRT+++ KIYRIG  +  K
Sbjct: 245 GLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292



 Score =  114 bits (275), Expect = 1e-26
 Identities = 79/231 (34%), Positives = 105/231 (45%)
 Frame = -2

Query: 800 TQMKLLKQGQKKAHIMESXXTGVPXXTK*NGPENILEKPIPVDSVFAXR*ND*LHWCHQG 621
           TQ++     QKKAH+ME    G     K        EK + + S F       +    +G
Sbjct: 164 TQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRG 223

Query: 620 QKDTKVSLLVGTQRSYPVRHTRVLGKLPALELGILXGCRSXXXXXXXXXXXXXLKWTRKS 441
           + +   +   GT+R  P +  R L K+  +        +               +   K 
Sbjct: 224 KGNEGTTARWGTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKI 282

Query: 440 IVLXQGIHXKDGXVIXNXAFTEYXLFEKSITPMGGFPHYGEVNXDFVMXKGCCMGPXKRV 261
             +  G   K+       A T++   EK ITPMGGF  YG V  DFVM  G   GP KRV
Sbjct: 283 YRIGAGDDAKN-------ASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRV 335

Query: 260 IXFRKXLXVHTKRAAXEKINLKFIDIXSKFGHGRFQTPADKAAXMGTXKKD 108
           +  RK L  HT R A E ++LK+ID  SKFGHGRFQTPA+    +GT KKD
Sbjct: 336 LTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 630 SPRAKGYXGVTSRWHTKKLPRKTHK 556
           +P++K + G T  WH+   PR T K
Sbjct: 412 TPKSK-HAGSTQEWHSHTTPRSTSK 435


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 590 QREVTPXYPFALGDTNAVNHF 652
           QR V P  PFA+G    + HF
Sbjct: 161 QRTVPPIMPFAMGTLGFLTHF 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,644,438
Number of Sequences: 5004
Number of extensions: 42878
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)