Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_I16
(729 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 109 5e-23
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 99 6e-20
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 97 4e-19
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 87 3e-16
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 83 7e-15
UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S riboso... 83 9e-15
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 58 2e-07
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 54 4e-06
UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep: ... 50 6e-05
UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-... 36 1.3
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 33 5.4
UniRef50_Q8GPX1 Cluster: Putative uncharacterized protein ORF SG... 33 9.5
UniRef50_Q8IKJ3 Cluster: Putative uncharacterized protein; n=1; ... 33 9.5
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 109 bits (263), Expect = 5e-23
Identities = 57/91 (62%), Positives = 67/91 (73%)
Frame = -2
Query: 365 EKSITPDGRFXPIMVKXTXDFCDDQGCCMGPXKRIITLRKSLRVHTKRAALEKINLKFID 186
+KSI P G F + T DF +GC +G KR++TLRKSL V TKR ALEKI+LKFID
Sbjct: 311 DKSINPLGGFVHYG-EVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFID 369
Query: 185 TSSKFGHGRFQTPADKAAFMGTLKKDRIREE 93
T+SKFGHGRFQT +K AFMG LKKDRI +E
Sbjct: 370 TTSKFGHGRFQTMEEKKAFMGPLKKDRIAKE 400
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 99 bits (238), Expect = 6e-20
Identities = 53/90 (58%), Positives = 63/90 (70%)
Frame = -2
Query: 365 EKSITPDGRFXPIMVKXTXDFCDDQGCCMGPXKRIITLRKSLRVHTKRAALEKINLKFID 186
+K+ITP G F P D+ +G +GP KR+ITLRKSL TKR A EKINLK+ID
Sbjct: 260 QKTITPMGGF-PRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWID 318
Query: 185 TSSKFGHGRFQTPADKAAFMGTLKKDRIRE 96
TSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 319 TSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 348
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 97.1 bits (231), Expect = 4e-19
Identities = 52/89 (58%), Positives = 59/89 (66%)
Frame = -2
Query: 362 KSITPDGRFXPIMVKXTXDFCDDQGCCMGPXKRIITLRKSLRVHTKRAALEKINLKFIDT 183
KSITP G F P + DF +GC G KR+ITLRKSL VH R A+E I LKFIDT
Sbjct: 312 KSITPLGGF-PHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDT 370
Query: 182 SSKFGHGRFQTPADKAAFMGTLKKDRIRE 96
+SKFGHGRFQT +K AFMG KK +E
Sbjct: 371 TSKFGHGRFQTAQEKRAFMGPQKKHLEKE 399
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 87.4 bits (207), Expect = 3e-16
Identities = 46/90 (51%), Positives = 56/90 (62%)
Frame = -2
Query: 362 KSITPDGRFXPIMVKXTXDFCDDQGCCMGPXKRIITLRKSLRVHTKRAALEKINLKFIDT 183
K+ITP G F D+ +G GP +R+ITLR+ + T R EKI LKFIDT
Sbjct: 361 KTITPMGGFVGYGTVRN-DYVMLKGSVAGPRRRVITLRRPMAPQTSRKLTEKITLKFIDT 419
Query: 182 SSKFGHGRFQTPADKAAFMGTLKKDRIREE 93
SSK GHGRFQT +K+ + G LKKDRIR E
Sbjct: 420 SSKIGHGRFQTKKEKSQWYGPLKKDRIRRE 449
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 83.0 bits (196), Expect = 7e-15
Identities = 43/87 (49%), Positives = 56/87 (64%)
Frame = -2
Query: 368 FEKSITPDGRFXPIMVKXTXDFCDDQGCCMGPXKRIITLRKSLRVHTKRAALEKINLKFI 189
+ KSI+P G K T DF + C +G KR+++L KSL + TK+ L+K+N KFI
Sbjct: 255 YTKSISPLGGCIHCG-KVTNDFVMLKDCLVGTKKRVLSLCKSLLMRTKQQTLQKVNFKFI 313
Query: 188 DTSSKFGHGRFQTPADKAAFMGTLKKD 108
DT+SKFGHG FQ +K FMG LKKD
Sbjct: 314 DTTSKFGHGCFQIVGEKKGFMGPLKKD 340
>UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S ribosomal
protein L3 (L4); n=1; Macaca mulatta|Rep: PREDICTED:
similar to 60S ribosomal protein L3 (L4) - Macaca
mulatta
Length = 153
Score = 82.6 bits (195), Expect = 9e-15
Identities = 40/63 (63%), Positives = 49/63 (77%)
Frame = -2
Query: 281 MGPXKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRI 102
+G K+++TL KS V TK ALEKI+LKFIDT+SKFGHGRFQT +K AFMG LKKD+
Sbjct: 88 VGTKKQVLTLCKSSLVQTKWRALEKIDLKFIDTTSKFGHGRFQTIGEKKAFMGPLKKDQT 147
Query: 101 REE 93
+E
Sbjct: 148 AKE 150
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 58.0 bits (134), Expect = 2e-07
Identities = 34/74 (45%), Positives = 44/74 (59%)
Frame = -2
Query: 314 TXDFCDDQGCCMGPXKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKA 135
T DF +GC + K + T+ K L V T + AL+KI+ K DT+ K GHG FQT K
Sbjct: 305 TNDFIRLKGCAVRTKKHL-TICKYLLVQTIQWALKKIDPKLNDTTYKVGHGCFQTTEGKR 363
Query: 134 AFMGTLKKDRIREE 93
AF+G LKK+ EE
Sbjct: 364 AFIGPLKKECTAEE 377
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 54.0 bits (124), Expect = 4e-06
Identities = 27/61 (44%), Positives = 38/61 (62%)
Frame = -2
Query: 308 DFCDDQGCCMGPXKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAF 129
D+ +G G KR I LRK+++ EKI LK++DTSSK GHGR+++ ADK +
Sbjct: 305 DYLIIKGSMTGSSKRPILLRKNIKNKISSVITEKIILKYVDTSSKRGHGRYESSADKFSK 364
Query: 128 M 126
M
Sbjct: 365 M 365
>UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep:
Ribosomal protein L3 - Mus musculus (Mouse)
Length = 67
Score = 50.0 bits (114), Expect = 6e-05
Identities = 28/53 (52%), Positives = 34/53 (64%)
Frame = -2
Query: 365 EKSITPDGRFXPIMVKXTXDFCDDQGCCMGPXKRIITLRKSLRVHTKRAALEK 207
+KSI P G F + T DF +GC +G KR++TLRKSL V TKR ALEK
Sbjct: 16 DKSINPLGGFVHYG-EVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEK 67
>UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-12
- Homo sapiens (Human)
Length = 103
Score = 35.5 bits (78), Expect = 1.3
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = -3
Query: 241 CVCIQRGLH*KRSTSNSLTPRPSSVMVDSRRRLTRLHSWVH 119
C C + G +R T +SLTP PS M SR R HSW H
Sbjct: 63 CWCRRSGGLWRRLTLSSLTPPPSLAMAASRPWRRRKHSWDH 103
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 33.5 bits (73), Expect = 5.4
Identities = 21/66 (31%), Positives = 33/66 (50%)
Frame = -2
Query: 365 EKSITPDGRFXPIMVKXTXDFCDDQGCCMGPXKRIITLRKSLRVHTKRAALEKINLKFID 186
E +TP G F + T + +G GP KR++ R +R HT + ++L ++
Sbjct: 296 ESDVTPAGGFLHYG-EVTNPYMVLEGSLPGPAKRLLRFRDPVRPHTN---VFDVDLTYVS 351
Query: 185 TSSKFG 168
TSSK G
Sbjct: 352 TSSKQG 357
>UniRef50_Q8GPX1 Cluster: Putative uncharacterized protein ORF SG31;
n=2; Pseudomonadaceae|Rep: Putative uncharacterized
protein ORF SG31 - Pseudomonas aeruginosa
Length = 161
Score = 32.7 bits (71), Expect = 9.5
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = -2
Query: 263 IITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAA 132
I R + + KR+AL+K+ K I+ + GHGR P+D+AA
Sbjct: 52 IAARRSTYKQLNKRSALDKVKRK-IEKAKGTGHGRTAVPSDQAA 94
>UniRef50_Q8IKJ3 Cluster: Putative uncharacterized protein; n=1;
Plasmodium falciparum 3D7|Rep: Putative uncharacterized
protein - Plasmodium falciparum (isolate 3D7)
Length = 93
Score = 32.7 bits (71), Expect = 9.5
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 3 FFFFFALSNVYFHGLHLRLRSSRWGCGSRSFFA 101
FFFFF + N YF+ L L ++ GCG FA
Sbjct: 20 FFFFFVVYNDYFNEPELPLDENKKGCGQFKCFA 52
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 477,036,559
Number of Sequences: 1657284
Number of extensions: 6975673
Number of successful extensions: 13056
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 12829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13053
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 58853922985
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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