Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_I16
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    99   3e-22
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    99   3e-22
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   3.6  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =   99 bits (238), Expect = 3e-22
 Identities = 51/86 (59%), Positives = 59/86 (68%)
 Frame = -2

Query: 365 EKSITPDGRFXPIMVKXTXDFCDDQGCCMGPXKRIITLRKSLRVHTKRAALEKINLKFID 186
           EK ITP G F    V    DF    G   GP KR++TLRKSL  HT R ALE ++LK+ID
Sbjct: 302 EKRITPMGGFVRYGVVEN-DFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWID 360

Query: 185 TSSKFGHGRFQTPADKAAFMGTLKKD 108
           T+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 361 TASKFGHGRFQTPAEAKQFLGTLKKD 386


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =   99 bits (238), Expect = 3e-22
 Identities = 51/86 (59%), Positives = 59/86 (68%)
 Frame = -2

Query: 365 EKSITPDGRFXPIMVKXTXDFCDDQGCCMGPXKRIITLRKSLRVHTKRAALEKINLKFID 186
           EK ITP G F    V    DF    G   GP KR++TLRKSL  HT R ALE ++LK+ID
Sbjct: 302 EKRITPMGGFVRYGVVEN-DFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWID 360

Query: 185 TSSKFGHGRFQTPADKAAFMGTLKKD 108
           T+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 361 TASKFGHGRFQTPAEAKQFLGTLKKD 386


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 129 HGYTQEGSYSRRSCGYHNPS 70
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,970,610
Number of Sequences: 5004
Number of extensions: 29395
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)