Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_I16
         (729 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)         106   2e-23
SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)                   29   2.9  
SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08)                   28   6.7  

>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score =  106 bits (254), Expect = 2e-23
 Identities = 50/71 (70%), Positives = 56/71 (78%)
 Frame = -2

Query: 308 DFCDDQGCCMGPXKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAF 129
           DF   +GC +GP KR++TLRKSL VHT R A EKI LKFIDTSSKFGHGRFQ PA+K AF
Sbjct: 226 DFLMVKGCVVGPKKRVLTLRKSLLVHTSRDAAEKITLKFIDTSSKFGHGRFQHPAEKRAF 285

Query: 128 MGTLKKDRIRE 96
           MG LK DR +E
Sbjct: 286 MGMLKSDREKE 296


>SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)
          Length = 458

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 27  NVYFHGLHLRLRSSRWGCGSRSFFANTILLE 119
           N+Y HG+ L LR   +GCGS       +L++
Sbjct: 368 NIYSHGVRLFLRYLGYGCGSDGALPYCVLMD 398


>SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08)
          Length = 545

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -1

Query: 159 IPDAG*QGCIHGYTQEGSYSRRSCGYHNPSGCCAALSVVREN 34
           I D G   CIH +T +G Y    C + +  G        REN
Sbjct: 410 ISDDG-ANCIHVFTLDGQYVSNECSWESHEGYTHIAVTAREN 450


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,899,048
Number of Sequences: 59808
Number of extensions: 232613
Number of successful extensions: 414
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)