Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_I16
         (729 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi...    89   4e-18
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi...    89   4e-18
At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi...    85   5e-17
At5g22400.1 68418.m02613 rac GTPase activating protein, putative...    28   7.3  

>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 44/85 (51%), Positives = 55/85 (64%)
 Frame = -2

Query: 365 EKSITPDGRFXPIMVKXTXDFCDDQGCCMGPXKRIITLRKSLRVHTKRAALEKINLKFID 186
           EK +TP G F P       D+   +GCC+GP KR++TLR+SL   T R ALE+I LKFID
Sbjct: 306 EKDVTPMGGF-PHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFID 364

Query: 185 TSSKFGHGRFQTPADKAAFMGTLKK 111
           T+S FGHGRFQT  +K  F   + K
Sbjct: 365 TASIFGHGRFQTSLEKMRFYNRVTK 389


>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 44/85 (51%), Positives = 55/85 (64%)
 Frame = -2

Query: 365 EKSITPDGRFXPIMVKXTXDFCDDQGCCMGPXKRIITLRKSLRVHTKRAALEKINLKFID 186
           EK +TP G F P       D+   +GCC+GP KR++TLR+SL   T R ALE+I LKFID
Sbjct: 306 EKDVTPMGGF-PHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFID 364

Query: 185 TSSKFGHGRFQTPADKAAFMGTLKK 111
           T+S FGHGRFQT  +K  F   + K
Sbjct: 365 TASIFGHGRFQTSLEKMRFYNRVTK 389


>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
           to ribosomal protein GI:806279 from [Arabidopsis
           thaliana]
          Length = 390

 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 44/85 (51%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
 Frame = -2

Query: 365 EKSITPDGRFXPIMVKXTXDFCDDQGCCMGPXKRIITLRKSLRVHTKRAALEKINLKFID 186
           EK ITP G F P       D+   +GCC+GP KR++TLR++L   T R A+E+I LKFID
Sbjct: 306 EKDITPMGGF-PHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKFID 364

Query: 185 TSSKFGHGRFQTPADKAAFMG-TLK 114
            +S  GHGRFQT  +KA F G T+K
Sbjct: 365 AASNGGHGRFQTSQEKAKFYGRTIK 389


>At5g22400.1 68418.m02613 rac GTPase activating protein, putative
           similar to rac GTPase activating protein 1 [Lotus
           japonicus] GI:3695059; contains Pfam profile PF00620:
           RhoGAP domain
          Length = 466

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 205 STSNSLTPRPSSVMVDSRRRLTRLHSWVHSRR 110
           S+S+S +P PSS+   SR   T L S  H+RR
Sbjct: 17  SSSSSSSPSPSSLSYASRSNATLLISSDHNRR 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,565,668
Number of Sequences: 28952
Number of extensions: 162880
Number of successful extensions: 348
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)