Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_I15
         (770 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)         84   1e-16
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)                        29   3.1  
SB_15535| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46)            28   7.3  
SB_27097| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_7011| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.6  

>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
          Length = 261

 Score = 84.2 bits (199), Expect = 1e-16
 Identities = 38/54 (70%), Positives = 46/54 (85%)
 Frame = -2

Query: 739 IAPLSVVIPAHNTGLGPEKTSXFQALXIPTKISKGTIEIINDVHILKPGDKVGA 578
           IAP+ V +PA NTGLGPEKTS FQAL IPTKI++GTIEIINDVH++K  +K+ A
Sbjct: 98  IAPIDVFVPAGNTGLGPEKTSFFQALAIPTKIARGTIEIINDVHLIKKDEKLKA 151


>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
          Length = 870

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +2

Query: 614 IVDDFNSTL*NLGRDXKSLEXRXLLWTEAGVVGGNDX*QWG 736
           I+D  NS   +  R  K+LE R LL+  +GV GG +  ++G
Sbjct: 144 IIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYG 184


>SB_15535| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 837

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +2

Query: 338 QKVLETIGNGMRG*SNSWVSNSQRKSSYISNSSLELGTEIFWFDVQNFR 484
           Q + +++  G+     SW+SN      +  + S++ G E F+ D+ + R
Sbjct: 545 QFIADSLPGGLSSRVLSWISNKVNVRKFFQHISVQFGREYFYSDLPSRR 593


>SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46)
          Length = 320

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = -2

Query: 586 VGASEATLLNMLNISPFSYGLVVKQVYD---SGTIFAP-EILDIKPEDLRAKFQAGVANV 419
           +  S +  + +L +SP  YG+    +     +G +F    IL + PE + +   A VA  
Sbjct: 82  IAGSSSVYIGLLGLSPAQYGITFAAIVSALIAGALFTQRRILQLGPEKIVSIGAALVATG 141

Query: 418 AALSLAI 398
           A  +LAI
Sbjct: 142 ALTTLAI 148


>SB_27097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -3

Query: 543 LHSHMVLLLSRYMILELFLHLKFWTSNQKIS 451
           L S +++++ RY+ +   LH + W S +K+S
Sbjct: 145 LLSMLLMMVDRYIAIAWGLHYRIWKSQRKVS 175


>SB_7011| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/39 (33%), Positives = 15/39 (38%)
 Frame = -1

Query: 449 CQVPSWXXXXXXSFFGYWIPNYCFSPAFHCQWFQEPFGH 333
           C  P           GYW+ NYC     +CQ     FGH
Sbjct: 318 CNTPDSYIGIGAKQSGYWVGNYCMQ---YCQVKLAAFGH 353


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,371,899
Number of Sequences: 59808
Number of extensions: 367945
Number of successful extensions: 751
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)